Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   NGO_RS02340 Genome accession   NC_002946
Coordinates   448543..449523 (+) Length   326 a.a.
NCBI ID   WP_010951046.1    Uniprot ID   Q5F9E4
Organism   Neisseria gonorrhoeae FA 1090     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 443543..454523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGO_RS02310 (NGO0449) - 444039..444548 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NGO_RS02315 (NGO_02400) - 444778..445360 (-) 583 Protein_455 superoxide dismutase -
  NGO_RS02325 (NGO0451) dnaB 445524..446930 (+) 1407 WP_010951043.1 replicative DNA helicase -
  NGO_RS02330 (NGO0452) pilH 447238..447903 (+) 666 WP_010951044.1 GspH/FimT family pseudopilin Machinery gene
  NGO_RS02335 (NGO0453) pilV 447935..448546 (+) 612 WP_010951045.1 type IV pilus modification protein PilV Machinery gene
  NGO_RS02340 (NGO0454) pilJ 448543..449523 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  NGO_RS02345 (NGO0455) pilK 449502..450113 (+) 612 WP_010951047.1 pilus assembly PilX family protein Machinery gene
  NGO_RS02350 (NGO0456) pilL 450115..450588 (+) 474 WP_025456309.1 PilX family type IV pilin Machinery gene
  NGO_RS02355 (NGO0457) - 450658..450966 (-) 309 WP_010951048.1 AzlD family protein -
  NGO_RS02360 (NGO_02440) - 450963..451674 (-) 712 Protein_463 AzlC family ABC transporter permease -
  NGO_RS02365 (NGO0459) dut 451840..452292 (+) 453 WP_010951049.1 dUTP diphosphatase -
  NGO_RS02370 (NGO0460) dapC 452364..453551 (+) 1188 WP_003706584.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35949.07 Da        Isoelectric Point: 9.7237

>NTDB_id=21146 NGO_RS02340 WP_010951046.1 448543..449523(+) (pilJ) [Neisseria gonorrhoeae FA 1090]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSIIVLIAVVSSYFTSRKLNDVANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTKDDIVDSSNQTQSNLAKPGAKQENPLFSLKRSGMDKQLIPVAESIDIKYPGFIQRLNALVFQYGIDDLDASA
ETVVVSSCSKIAKPGKKISTLQEAKSALQITNDDKQNGNITRQKHVVNAYAVGRFGNNEESLFRFQLDDKGKWGNPQLLV
KKVKRMDVRYIYVSGCPEDEDAGKEEKFRYTNKFDKSKNAVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNV
CANRTL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=21146 NGO_RS02340 WP_010951046.1 448543..449523(+) (pilJ) [Neisseria gonorrhoeae FA 1090]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTATAATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGTGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCCGAGCATACTAAAGACGATATTGTTGATTCAAGTAATCAAACTCAATCTAACCTTGCAAAACCCGG
TGCCAAACAAGAAAATCCCCTTTTTTCCTTAAAAAGGAGCGGCATGGATAAACAACTGATTCCCGTTGCTGAATCCATAG
ATATTAAATATCCGGGTTTTATCCAGCGCCTTAACGCATTGGTTTTCCAATACGGTATCGATGATCTTGATGCGAGTGCT
GAGACTGTTGTAGTCAGCAGCTGTTCCAAAATAGCAAAACCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGC
ATTACAGATTACTAATGATGATAAACAAAATGGAAATATCACCCGTCAGAAACATGTGGTCAATGCCTATGCGGTCGGCA
GGTTTGGCAATAATGAGGAAAGTTTGTTCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGTG
AAAAAGGTTAAACGTATGGATGTGCGGTATATTTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAAAA
ATTCAGATATACGAATAAATTCGACAAATCCAAAAATGCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCC
TTAATGCCAAGATTGCCGCTTCTTCAGACAATAGTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTA
TGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5F9E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

75.988

100

0.767

Multiple sequence alignment