Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   XF_RS11085 Genome accession   NC_002488
Coordinates   2419401..2421011 (-) Length   536 a.a.
NCBI ID   WP_010894967.1    Uniprot ID   -
Organism   Xylella fastidiosa 9a5c     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2414401..2426011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XF_RS11065 (XF2542) pilA/pilAI 2414710..2415156 (+) 447 WP_010894963.1 pilin Machinery gene
  XF_RS11070 (XF2543) - 2415594..2415944 (-) 351 WP_023907062.1 hypothetical protein -
  XF_RS11075 (XF2544) pilB 2415976..2417709 (+) 1734 WP_010894965.1 type IV-A pilus assembly ATPase PilB Machinery gene
  XF_RS11080 (XF2545) - 2417803..2419215 (-) 1413 WP_031338065.1 sigma-54-dependent transcriptional regulator -
  XF_RS11085 (XF2546) pilS 2419401..2421011 (-) 1611 WP_010894967.1 sensor histidine kinase Regulator
  XF_RS11090 (XF2547) sucC 2421266..2422429 (+) 1164 WP_010894968.1 ADP-forming succinate--CoA ligase subunit beta -
  XF_RS11095 (XF2548) sucD 2422458..2423330 (+) 873 WP_010894969.1 succinate--CoA ligase subunit alpha -
  XF_RS11100 (XF2549) - 2423617..2424201 (+) 585 WP_229716517.1 hypothetical protein -

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 59023.27 Da        Isoelectric Point: 6.0218

>NTDB_id=21147 XF_RS11085 WP_010894967.1 2419401..2421011(-) (pilS) [Xylella fastidiosa 9a5c]
MLFSASLIHRIEFAPQRELYFLALYRILEAGLIAALVFSPVSILVDPESDPYLGTAVAVGYLLLATILLVWGRNERWFTP
LVFGSTVADILAATLAIHALPKASAGIAMMLLFNVAAAAILLRLRFSMILAWIAGVAMLVEYIWTVLSEGDSSRSLAELV
MFFTSYTAVAYMCHQAAQRARSSQALAEKRRAQIVNLAEINELIIRRMRTGVLVVDAANRIGLSNETAAALLGYDRQLVE
SDYDLATVAPELTKRLKCWRIGRHYEDTPLRLAPDQPEVQPRFVSLLADSGLTLIFLDDVSVVSRRAESLTLLALGRFSA
SLAHEIRNPLAAIKHASQLLEESSNLDKADQRLLEIILKQCQRTNGIVESVLGLARRERANPENLDLVGFVSRFVDEYRQ
TLSSEYDNLEIQTLHSTVQALVDPRHLYQILAVLTHNALRYGRFPDTPAQVRIEVVDTGGSVGIDVLDQGPGIPDAAVLQ
LFQPFFTTSDHGTGLGLYIARELCNANQSNLEYVAIPGGGACFRITLPGPYALIPK

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=21147 XF_RS11085 WP_010894967.1 2419401..2421011(-) (pilS) [Xylella fastidiosa 9a5c]
GTGTTGTTCAGCGCTTCGCTGATTCATCGGATCGAATTTGCTCCGCAGCGTGAACTTTATTTTCTCGCCTTGTATCGGAT
CTTGGAGGCTGGATTGATCGCGGCCTTGGTGTTCAGTCCGGTGTCGATATTGGTGGATCCTGAGAGTGATCCATATTTGG
GCACGGCTGTCGCTGTCGGTTATTTGCTGTTGGCTACCATTTTGTTGGTCTGGGGTCGTAATGAGCGCTGGTTCACTCCA
TTAGTCTTTGGAAGTACTGTCGCCGACATTTTGGCTGCCACTCTTGCTATTCACGCCCTGCCTAAAGCCAGTGCCGGCAT
TGCGATGATGTTGTTGTTTAACGTTGCCGCCGCCGCCATCTTATTGCGGTTGCGTTTCAGCATGATCCTGGCTTGGATTG
CTGGGGTTGCGATGCTTGTGGAATACATCTGGACGGTACTCAGTGAGGGTGACTCCTCACGTTCACTGGCCGAGCTCGTT
ATGTTTTTCACCAGCTACACTGCAGTGGCGTATATGTGTCATCAGGCCGCGCAGCGGGCCAGATCTAGCCAAGCTCTGGC
TGAAAAGCGCCGTGCCCAGATAGTCAACTTGGCAGAGATCAACGAGCTGATTATCCGACGTATGCGGACGGGTGTGTTGG
TGGTGGATGCTGCTAATCGAATCGGTTTGAGTAACGAAACTGCAGCTGCGTTGCTGGGATACGACAGACAATTGGTCGAG
AGTGATTACGATCTCGCTACGGTTGCTCCGGAGTTGACAAAGCGTCTGAAGTGTTGGCGTATCGGTCGCCACTACGAAGA
TACTCCGTTGCGATTAGCGCCTGATCAACCTGAGGTCCAGCCTCGCTTTGTGAGTCTGCTTGCCGACAGTGGATTGACAT
TAATTTTCCTTGATGATGTCAGTGTTGTTTCACGCCGTGCCGAATCGTTGACTTTGTTGGCGCTTGGACGTTTTTCAGCC
AGTTTGGCACACGAGATTCGTAATCCTTTGGCTGCAATCAAACATGCATCGCAGCTCTTGGAAGAGTCCTCCAATCTTGA
CAAAGCCGATCAACGGCTGTTGGAGATTATTCTAAAGCAGTGCCAGCGGACCAATGGGATTGTGGAGAGCGTGCTTGGCT
TGGCAAGACGCGAACGTGCTAACCCGGAAAATTTGGATTTGGTCGGTTTCGTGTCCCGATTTGTCGATGAATACCGCCAG
ACATTGTCAAGCGAGTATGACAATCTGGAAATACAAACGTTGCACAGTACCGTGCAGGCACTGGTGGATCCACGCCACTT
GTACCAGATCCTCGCTGTCCTTACCCACAACGCGTTGCGTTATGGCCGCTTTCCGGATACTCCAGCACAGGTGCGTATTG
AGGTGGTAGATACCGGAGGCAGCGTGGGGATTGATGTCCTTGATCAGGGGCCTGGTATACCCGATGCGGCTGTTTTGCAG
CTTTTTCAGCCTTTTTTCACTACTTCCGACCATGGTACGGGGCTTGGTCTATACATCGCTCGTGAGCTGTGCAACGCGAA
TCAATCCAATCTTGAGTACGTGGCCATTCCAGGGGGCGGGGCTTGTTTCCGGATTACTTTGCCGGGTCCGTATGCATTGA
TTCCGAAGTGA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(423-528)

His Kinase A (phospho-acceptor) domain (HisKA)

(314-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

37.643

98.134

0.369

Multiple sequence alignment