Detailed information NTG0210888

Bioinformatically predicted

Overview

• Name: comP
• Type: Machinery gene
• Locus tag: Tchl_RS08080
• Genome accession: NZ_CP018839
• Coordinates: 1745194..1745616 (+)
• Length: 140 a.a.
• NCBI ID: WP_075147954.1
• Uniprot ID: -
• Organism: Thauera chlorobenzoica strain 3CB1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1740194..1750616

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Tchl_RS08055 (Tchl_1616)	ybgC	1740853..1741311 (-)	459	WP_075147949.1	tol-pal system-associated acyl-CoA thioesterase	-
Tchl_RS08060 (Tchl_1617)	hslV	1741553..1742089 (+)	537	WP_075147950.1	ATP-dependent protease subunit HslV	-
Tchl_RS08065 (Tchl_1618)	hslU	1742100..1743437 (+)	1338	WP_075147951.1	ATP-dependent protease ATPase subunit HslU	-
Tchl_RS08070 (Tchl_1619)	-	1743527..1744402 (+)	876	WP_075147952.1	AEC family transporter	-
Tchl_RS08075 (Tchl_1620)	-	1744419..1744973 (-)	555	WP_075147953.1	SEL1-like repeat protein	-
Tchl_RS08080	comP	1745194..1745616 (+)	423	WP_075147954.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
Tchl_RS08085 (Tchl_1621)	-	1745733..1746047 (-)	315	WP_075147955.1	hypothetical protein	-
Tchl_RS08090 (Tchl_1622)	-	1746298..1746531 (+)	234	WP_075147956.1	TA system antitoxin ParD family protein	-
Tchl_RS08095 (Tchl_1623)	-	1746528..1746806 (+)	279	WP_075147957.1	type II toxin-antitoxin system RelE/ParE family toxin	-
Tchl_RS08100 (Tchl_1624)	-	1746928..1747965 (-)	1038	WP_075147958.1	GGDEF domain-containing protein	-
Tchl_RS08105 (Tchl_1625)	-	1748409..1749503 (+)	1095	WP_075147959.1	tellurite resistance/C4-dicarboxylate transporter family protein	-
Tchl_RS08110 (Tchl_1626)	-	1749517..1750278 (-)	762	WP_075147960.1	slipin family protein	-

Sequence

Protein

• Length: 140 a.a.
• Molecular weight: 14177.36 Da
• Isoelectric Point: 8.1096

>NTDB_id=210888 Tchl_RS08080 WP_075147954.1 1745194..1745616(+) (comP) [Thauera chlorobenzoica strain 3CB1]
MKKMQQGFTLIELMIVVAIIGILAAVALPAYTDYTVRARVSEGLVVSSAAKTTVSENLTNGVAAANSCNGVTVGLVGKTT
ISCSSGVITASVAADSSTTVALTLRPTLVTTGAGGVTWACTTADTNFKYVPAECRTATPT

Nucleotide

• Length: 423 bp

>NTDB_id=210888 Tchl_RS08080 WP_075147954.1 1745194..1745616(+) (comP) [Thauera chlorobenzoica strain 3CB1]
ATGAAGAAAATGCAACAGGGCTTCACCCTGATCGAACTGATGATCGTGGTGGCGATCATCGGGATTCTGGCGGCCGTGGC
GCTGCCGGCGTATACCGATTACACGGTAAGAGCAAGAGTGTCGGAGGGGTTGGTAGTTTCGAGCGCTGCAAAAACAACGG
TTTCTGAAAATCTTACTAATGGTGTCGCCGCTGCTAATTCGTGTAACGGCGTTACCGTTGGTCTTGTCGGAAAGACTACG
ATTAGTTGTTCTTCTGGCGTAATTACTGCTTCTGTTGCCGCGGATTCTAGTACAACTGTTGCTCTTACTCTCAGGCCAAC
ATTGGTTACGACTGGTGCTGGTGGCGTCACATGGGCATGTACAACTGCTGACACAAACTTTAAATACGTTCCGGCAGAAT
GCCGTACAGCTACCCCGACGTAA

Domains

Predicted by InterproScan.

• Pilin (bacterial filament) (Pilin) (36-135)

• Prokaryotic N-terminal methylation motif (N_methyl) (3-28)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comP	Acinetobacter baylyi ADP1	50.34	100	0.529
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	38.421	100	0.521
pilA	Ralstonia pseudosolanacearum GMI1000	41.42	100	0.5
pilE	Neisseria gonorrhoeae strain FA1090	37.87	100	0.457
pilA2	Legionella pneumophila str. Paris	44.286	100	0.443
pilA2	Legionella pneumophila strain ERS1305867	44.286	100	0.443
pilE	Neisseria gonorrhoeae MS11	37.107	100	0.421
pilA	Vibrio campbellii strain DS40M4	35.484	100	0.393
pilA	Pseudomonas aeruginosa PAK	33.333	100	0.379
pilA/pilA1	Eikenella corrodens VA1	34.868	100	0.379
pilA	Haemophilus influenzae Rd KW20	38.129	99.286	0.379
pilA	Glaesserella parasuis strain SC1401	33.987	100	0.371