Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   BTR42_RS02230 Genome accession   NZ_CP018822
Coordinates   398727..399215 (+) Length   162 a.a.
NCBI ID   WP_077496210.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 393727..404215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS02230 (BTR42_01925) comX/sigX 398727..399215 (+) 489 WP_077496210.1 sigma-70 family RNA polymerase sigma factor Regulator
  BTR42_RS02235 (BTR42_01930) - 399326..400948 (-) 1623 WP_077496212.1 glycoside hydrolase family 5 protein -
  BTR42_RS02240 (BTR42_01935) - 401397..402758 (-) 1362 WP_077496214.1 aspartate kinase -
  BTR42_RS02245 (BTR42_01940) - 402852..403499 (+) 648 WP_009853410.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 19523.47 Da        Isoelectric Point: 7.9997

>NTDB_id=210617 BTR42_RS02230 WP_077496210.1 398727..399215(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KRKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGVGAREKLAKVMRGERFEGKKAFLTQIEPFFNEFKN
NF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=210617 BTR42_RS02230 WP_077496210.1 398727..399215(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGG
ACGACTTGTCCCTTTATGCCTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAACGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCT
GGCGGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGACTGGGAGTAGGGGCACGAGAGAAATTGGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAAAAAT
AATTTCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.