Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   BTR42_RS01945 Genome accession   NZ_CP018822
Coordinates   339573..340058 (+) Length   161 a.a.
NCBI ID   WP_077496174.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 326451..340464 339573..340058 within 0


Gene organization within MGE regions


Location: 326451..340464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS01885 (BTR42_01635) - 326451..326975 (-) 525 WP_077496172.1 hypothetical protein -
  BTR42_RS01890 (BTR42_01640) - 327605..328381 (+) 777 WP_231873062.1 hypothetical protein -
  BTR42_RS13010 - 328752..328988 (-) 237 Protein_323 cell filamentation protein Fic -
  BTR42_RS12820 (BTR42_01645) - 328981..329168 (-) 188 Protein_324 hypothetical protein -
  BTR42_RS01905 (BTR42_01650) - 329300..332809 (+) 3510 WP_167367604.1 hypothetical protein -
  BTR42_RS01910 - 332937..333192 (+) 256 Protein_326 type II toxin-antitoxin system Phd/YefM family antitoxin -
  BTR42_RS01915 (BTR42_01665) - 333189..333558 (+) 370 Protein_327 type II toxin-antitoxin system death-on-curing family toxin -
  BTR42_RS01945 (BTR42_01675) comX/sigX 339573..340058 (+) 486 WP_077496174.1 sigma-70 family RNA polymerase sigma factor Regulator
  BTR42_RS01950 (BTR42_01680) - 340198..340464 (+) 267 WP_009853366.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19380.34 Da        Isoelectric Point: 7.2415

>NTDB_id=210613 BTR42_RS01945 WP_077496174.1 339573..340058(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFCLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KRKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGVGAREKLAKVMRGERFEGKKAFLTQIEPFFNEFRE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=210613 BTR42_RS01945 WP_077496174.1 339573..340058(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCTGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGG
ACGACTTGTCCCTTTATGCCTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAACGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCT
GGCGGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGACTGGGAGTAGGGGCACGAGAGAAATTGGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAGGGAA
AAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.