Detailed information NTG0020406

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: NCTC11637_01454
• Genome accession: LS483488
• Coordinates: 1468485..1469285 (-)
• Length: 266 a.a.
• NCBI ID: SQJ10298.1
• Uniprot ID: -
• Organism: Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 1463485..1474285

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NCTC11637_01447	recJ	1463628..1465178 (+)	1551	SQJ10218.1	ssDNA-specific exonuclease RecJ	-
NCTC11637_01448	rluD	1465178..1466059 (+)	882	SQJ10223.1	Pseudouridine synthase (RNA-uridine isomerase) (RNA pseudouridylate synthase)	-
NCTC11637_01449	-	1466162..1466722 (-)	561	SQJ10277.1	Uncharacterised protein	-
NCTC11637_01450	-	1466706..1467044 (-)	339	SQJ10294.1	Uncharacterised protein	-
NCTC11637_01451	hcpC_4	1467172..1467954 (-)	783	SQJ10295.1	cysteine-rich protein H	-
NCTC11637_01452	-	1467935..1468024 (-)	90	SQJ10296.1	Uncharacterised protein	-
NCTC11637_01453	dprB	1468084..1468488 (-)	405	SQJ10297.1	Holliday junction resolvase-like protein	Machinery gene
NCTC11637_01454	dprA	1468485..1469285 (-)	801	SQJ10298.1	DNA processing protein DprA	Machinery gene
NCTC11637_01455	minE	1469297..1469530 (-)	234	SQJ10299.1	cell division topological specificity factor MinE	-
NCTC11637_01456	minD	1469527..1470333 (-)	807	SQJ10301.1	cell division inhibitor	-
NCTC11637_01457	ilvC	1470357..1471349 (-)	993	SQJ10336.1	ketol-acid reductoisomerase	-
NCTC11637_01459	nadE	1471598..1472380 (+)	783	SQJ10338.1	NAD synthetase	-
NCTC11637_01460	lpxK	1472377..1473315 (+)	939	SQJ10339.1	tetraacyldisaccharide 4'-kinase	-
NCTC11637_01461	pseH	1473248..1473790 (-)	543	SQJ10340.1	pseudaminic acid biosynthesis N-acetyl transferase	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29787.67 Da
• Isoelectric Point: 8.5826

>NTDB_id=20406 NCTC11637_01454 SQJ10298.1 1468485..1469285(-) (dprA) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTITLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPVKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide

• Length: 801 bp

>NTDB_id=20406 NCTC11637_01454 SQJ10298.1 1468485..1469285(-) (dprA) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
ATGAAAAGCCATTTCCAATACAGCGCGCTAGAGAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCTCCTAAAAAACT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTGGGCGTG
GATATTATCGCTCAAGAAAACGCCTTGCCAAAAACGATCACGCTTTCGCCTTGCAGTTTGGATTTGATCTATCCTACAAA
CAATCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTCATGCCCGTTAAAG
GCTCTTTTTTAGCGAGAAACCGCTTGGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCTCAAAAATACCAAAAACCCTTGTTTGTTTTGCCTCAGCGCTTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACTCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGCGCCAAAAACCCCAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAGCGCATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (12-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Helicobacter pylori 26695	96.617	100	0.966
dprA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	48.673	84.962	0.414