Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | K08M4_RS02800 | Genome accession | NZ_CP017916 |
| Coordinates | 559420..559842 (-) | Length | 140 a.a. |
| NCBI ID | WP_086048777.1 | Uniprot ID | - |
| Organism | Vibrio syngnathi strain K08M4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 554420..564842
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K08M4_RS02780 (K08M4_05510) | coaE | 554937..555551 (-) | 615 | WP_086048773.1 | dephospho-CoA kinase | - |
| K08M4_RS02785 (K08M4_05520) | pilD | 555554..556423 (-) | 870 | WP_086048774.1 | A24 family peptidase | Machinery gene |
| K08M4_RS02790 (K08M4_05530) | pilC | 556492..557718 (-) | 1227 | WP_086048775.1 | type II secretion system F family protein | Machinery gene |
| K08M4_RS02795 (K08M4_05540) | pilB | 557734..559419 (-) | 1686 | WP_086048776.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| K08M4_RS02800 (K08M4_05550) | pilA | 559420..559842 (-) | 423 | WP_086048777.1 | pilin | Machinery gene |
| K08M4_RS02805 (K08M4_05560) | nadC | 560097..560987 (-) | 891 | WP_017079961.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| K08M4_RS02810 (K08M4_05570) | ampD | 561071..561670 (+) | 600 | WP_086048778.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| K08M4_RS02820 (K08M4_05580) | pdhR | 562153..562914 (+) | 762 | WP_009847596.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 14426.49 Da Isoelectric Point: 8.4829
>NTDB_id=204054 K08M4_RS02800 WP_086048777.1 559420..559842(-) (pilA) [Vibrio syngnathi strain K08M4]
MKNKNKRTNQKGFTLIELMIVVAIIGVLSAIAVPAYKDYVSKSELSSGLKTVKALVTPAELYIQENGALTATIGDIGSTG
SANSLGGITTTTANVIEFTFNSTSAINGTKVTLTRDASTGWSCAFTAGTGVTLPTIDGCS
MKNKNKRTNQKGFTLIELMIVVAIIGVLSAIAVPAYKDYVSKSELSSGLKTVKALVTPAELYIQENGALTATIGDIGSTG
SANSLGGITTTTANVIEFTFNSTSAINGTKVTLTRDASTGWSCAFTAGTGVTLPTIDGCS
Nucleotide
Download Length: 423 bp
>NTDB_id=204054 K08M4_RS02800 WP_086048777.1 559420..559842(-) (pilA) [Vibrio syngnathi strain K08M4]
ATGAAAAACAAAAATAAAAGAACAAATCAGAAAGGCTTTACGCTGATTGAATTGATGATTGTCGTGGCAATTATTGGGGT
GTTATCGGCAATTGCTGTACCGGCTTATAAAGATTATGTATCTAAAAGTGAACTATCATCAGGGCTTAAAACGGTAAAAG
CACTAGTCACTCCAGCAGAACTATATATTCAAGAGAATGGCGCACTTACAGCCACAATAGGCGATATTGGTTCGACAGGA
TCAGCTAATTCATTGGGGGGAATAACCACAACAACCGCGAATGTTATTGAATTCACATTTAATTCCACCAGTGCAATTAA
TGGAACAAAAGTTACATTAACGAGAGATGCTAGCACAGGTTGGAGTTGCGCCTTTACTGCTGGTACCGGTGTCACTCTTC
CAACTATTGATGGTTGCTCATAA
ATGAAAAACAAAAATAAAAGAACAAATCAGAAAGGCTTTACGCTGATTGAATTGATGATTGTCGTGGCAATTATTGGGGT
GTTATCGGCAATTGCTGTACCGGCTTATAAAGATTATGTATCTAAAAGTGAACTATCATCAGGGCTTAAAACGGTAAAAG
CACTAGTCACTCCAGCAGAACTATATATTCAAGAGAATGGCGCACTTACAGCCACAATAGGCGATATTGGTTCGACAGGA
TCAGCTAATTCATTGGGGGGAATAACCACAACAACCGCGAATGTTATTGAATTCACATTTAATTCCACCAGTGCAATTAA
TGGAACAAAAGTTACATTAACGAGAGATGCTAGCACAGGTTGGAGTTGCGCCTTTACTGCTGGTACCGGTGTCACTCTTC
CAACTATTGATGGTTGCTCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
55.479 |
100 |
0.579 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.481 |
96.429 |
0.4 |
| pilA | Vibrio cholerae strain A1552 |
41.481 |
96.429 |
0.4 |
| pilA | Vibrio cholerae C6706 |
41.481 |
96.429 |
0.4 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
41.985 |
93.571 |
0.393 |
| pilA | Pseudomonas aeruginosa PAK |
40.909 |
94.286 |
0.386 |
| pilA/pilA1 | Eikenella corrodens VA1 |
36.552 |
100 |
0.379 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
38.406 |
98.571 |
0.379 |
| comP | Acinetobacter baylyi ADP1 |
39.552 |
95.714 |
0.379 |
| pilA2 | Legionella pneumophila str. Paris |
41.129 |
88.571 |
0.364 |