Detailed information NTG0204051

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: K08M4_RS02785
• Genome accession: NZ_CP017916
• Coordinates: 555554..556423 (-)
• Length: 289 a.a.
• NCBI ID: WP_086048774.1
• Uniprot ID: -
• Organism: Vibrio syngnathi strain K08M4
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 550554..561423

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K08M4_RS02750 (K08M4_05450)	rpsP	551467..551715 (+)	249	WP_004735508.1	30S ribosomal protein S16	-
K08M4_RS02755 (K08M4_05460)	rimM	551742..552296 (+)	555	WP_009847609.1	ribosome maturation factor RimM	-
K08M4_RS02760 (K08M4_05470)	trmD	552323..553063 (+)	741	WP_086048771.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
K08M4_RS02765 (K08M4_05480)	rplS	553123..553476 (+)	354	WP_009847607.1	50S ribosomal protein L19	-
K08M4_RS02770 (K08M4_05490)	yacG	553892..554089 (-)	198	WP_017056605.1	DNA gyrase inhibitor YacG	-
K08M4_RS02775 (K08M4_05500)	zapD	554170..554910 (-)	741	WP_086048772.1	cell division protein ZapD	-
K08M4_RS02780 (K08M4_05510)	coaE	554937..555551 (-)	615	WP_086048773.1	dephospho-CoA kinase	-
K08M4_RS02785 (K08M4_05520)	pilD	555554..556423 (-)	870	WP_086048774.1	A24 family peptidase	Machinery gene
K08M4_RS02790 (K08M4_05530)	pilC	556492..557718 (-)	1227	WP_086048775.1	type II secretion system F family protein	Machinery gene
K08M4_RS02795 (K08M4_05540)	pilB	557734..559419 (-)	1686	WP_086048776.1	type IV-A pilus assembly ATPase PilB	Machinery gene
K08M4_RS02800 (K08M4_05550)	pilA	559420..559842 (-)	423	WP_086048777.1	pilin	Machinery gene
K08M4_RS02805 (K08M4_05560)	nadC	560097..560987 (-)	891	WP_017079961.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32483.69 Da
• Isoelectric Point: 7.6347

>NTDB_id=204051 K08M4_RS02785 WP_086048774.1 555554..556423(-) (pilD) [Vibrio syngnathi strain K08M4]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSACPKCKTQLRIV
DNVPVLSWLFLKGKCHSCANPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALIAATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=204051 K08M4_RS02785 WP_086048774.1 555554..556423(-) (pilD) [Vibrio syngnathi strain K08M4]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTTCTTATTGGCAGTTTCCTCAA
CGTAGTCATACACCGTTTACCGATTATGATGGAACGAGAGTGGCAACAAGAGTGCTCGGAGTATTTCTCTCAATATAAAA
TCCCAGCGCCAGAGGGGAAGTTCAATCTCAGTATCCCTCGTTCGGCTTGCCCGAAATGTAAAACCCAGTTAAGAATCGTC
GACAATGTTCCAGTATTAAGCTGGTTGTTCTTGAAAGGTAAGTGTCATAGCTGTGCTAACCCAATCAGTGCTCGCTATCC
ATTGGTCGAACTGCTGACTGCAATACTATGCACCGTCGTGGCTAGCCACTTTGGTTTCAGTTACTACGCCATTGCTTTGA
TTTTTTTCACCTTTGCATTGATTGCCGCAACCTTTATCGACCTAGATACCATGCTGTTACCTGATCAAATCACCTTACCT
TTGGTTTGGTCTGGTATCGCTTTGGCACTGTTTAACATCAGTCCTGTATCGCTTCAAGATTCCGTAGTTGGCGCAATGGC
TGGCTATCTAGCTTTGTGGTCTGTTTATTGGTTGTTCAAGCTACTAACAGGCAAAGAAGGCATGGGATATGGAGACTTCA
AACTCCTTGCCGCATTAGGTGCATGGCTTGGCTGGCAACACCTACCAATGATCATTCTTTTGTCGTCGCTGGTCGGTTTG
GTTTTCGGCTTGATTCAACTTCGCTTGAAACAGCAAGGCATAGATAAAGCCTTCCCATTTGGCCCATACCTGGCGATTGC
GGGTTGGGTAAGTTTGATGTGGGGCAATGACATCATGGGTTGGTATTTCACTTCTGTACTAGGGATTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	74.394	100	0.744
pilD	Vibrio cholerae strain A1552	68.403	99.654	0.682
pilD	Acinetobacter nosocomialis M2	51.311	92.388	0.474
pilD	Acinetobacter baumannii D1279779	50.936	92.388	0.471
pilD	Neisseria gonorrhoeae MS11	46.014	95.502	0.439