Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K08M4_RS02790 Genome accession   NZ_CP017916
Coordinates   556492..557718 (-) Length   408 a.a.
NCBI ID   WP_086048775.1    Uniprot ID   A0AA34XMI2
Organism   Vibrio syngnathi strain K08M4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 551492..562718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS02755 (K08M4_05460) rimM 551742..552296 (+) 555 WP_009847609.1 ribosome maturation factor RimM -
  K08M4_RS02760 (K08M4_05470) trmD 552323..553063 (+) 741 WP_086048771.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  K08M4_RS02765 (K08M4_05480) rplS 553123..553476 (+) 354 WP_009847607.1 50S ribosomal protein L19 -
  K08M4_RS02770 (K08M4_05490) yacG 553892..554089 (-) 198 WP_017056605.1 DNA gyrase inhibitor YacG -
  K08M4_RS02775 (K08M4_05500) zapD 554170..554910 (-) 741 WP_086048772.1 cell division protein ZapD -
  K08M4_RS02780 (K08M4_05510) coaE 554937..555551 (-) 615 WP_086048773.1 dephospho-CoA kinase -
  K08M4_RS02785 (K08M4_05520) pilD 555554..556423 (-) 870 WP_086048774.1 A24 family peptidase Machinery gene
  K08M4_RS02790 (K08M4_05530) pilC 556492..557718 (-) 1227 WP_086048775.1 type II secretion system F family protein Machinery gene
  K08M4_RS02795 (K08M4_05540) pilB 557734..559419 (-) 1686 WP_086048776.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K08M4_RS02800 (K08M4_05550) pilA 559420..559842 (-) 423 WP_086048777.1 pilin Machinery gene
  K08M4_RS02805 (K08M4_05560) nadC 560097..560987 (-) 891 WP_017079961.1 carboxylating nicotinate-nucleotide diphosphorylase -
  K08M4_RS02810 (K08M4_05570) ampD 561071..561670 (+) 600 WP_086048778.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45263.25 Da        Isoelectric Point: 10.1474

>NTDB_id=204052 K08M4_RS02790 WP_086048775.1 556492..557718(-) (pilC) [Vibrio syngnathi strain K08M4]
MSTKLQSQLKNYHWKGINSSGKKVSGQTLALAELEVREKLKEQHIQIKKIKKKSISAVTRLTHRVKAKDITILTRQLATM
LATGVPIVQAIKLVSDNHRKAEMKSILLHICRGVEAGTPISKAMRTASTHFDDLYTDLVATGELSGNLAQVFERLATYRE
KSEQLKSKVIKALIYPTMVVAVALTVSYLMLTMVIPEFESMFSGFGADLPWFTQQVLYLSHWMQAYSFYSAIGIGLLILS
FQQLRQRSYSIRLSTSRLGLRFPILGAVITKASIAKFSRTLSTSFSSGIPILTSLKTTAKTAGNLHYESAIIEVHRETAA
GMPMYIAMRNTNAFPEMVLQMVMIGEESGNLDDMLNKVASIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=204052 K08M4_RS02790 WP_086048775.1 556492..557718(-) (pilC) [Vibrio syngnathi strain K08M4]
ATGAGCACTAAACTGCAGTCACAATTAAAAAACTACCACTGGAAAGGCATAAACAGCTCAGGCAAAAAGGTGTCCGGGCA
AACCTTGGCACTCGCCGAATTAGAAGTACGAGAAAAGCTCAAAGAGCAGCATATTCAGATTAAGAAAATCAAAAAGAAAA
GTATCTCAGCAGTCACTCGTTTAACACATCGAGTCAAAGCCAAAGACATCACCATTTTGACTCGACAACTTGCGACCATG
CTTGCCACTGGCGTGCCTATCGTTCAGGCCATTAAGCTAGTGTCAGACAATCACCGTAAAGCTGAAATGAAATCAATTTT
ATTGCACATCTGTCGAGGTGTCGAAGCGGGAACCCCTATATCAAAAGCGATGCGGACGGCAAGCACTCACTTTGACGACC
TGTACACCGATTTGGTCGCTACTGGCGAGCTTTCCGGAAACCTAGCGCAAGTCTTTGAACGCTTGGCAACCTATAGAGAA
AAGAGTGAGCAGCTAAAGTCTAAGGTCATAAAAGCATTGATTTACCCCACAATGGTGGTCGCTGTCGCTTTGACTGTCTC
TTACTTAATGCTCACCATGGTCATTCCTGAATTTGAATCGATGTTTTCTGGTTTCGGAGCAGACTTACCTTGGTTCACCC
AGCAAGTGCTCTACCTTTCCCATTGGATGCAGGCTTATAGTTTCTATAGTGCCATCGGTATTGGTTTATTAATTCTGTCT
TTTCAGCAGCTGCGTCAGCGATCCTACTCGATTCGACTTTCAACCAGTCGCCTTGGCTTACGCTTTCCTATCTTGGGTGC
TGTCATCACCAAGGCATCGATTGCAAAGTTCAGCCGAACACTTTCAACCAGTTTCAGTTCAGGGATTCCTATTTTAACCA
GCCTTAAAACAACGGCTAAAACCGCAGGCAACCTGCATTATGAATCGGCCATCATCGAGGTTCACCGTGAAACTGCCGCA
GGCATGCCGATGTACATTGCAATGCGCAATACCAATGCCTTCCCAGAGATGGTTTTGCAGATGGTGATGATTGGTGAAGA
GTCCGGAAATCTTGATGATATGCTCAATAAAGTGGCCTCTATTTACGAATTTGAAGTAGACAATACCGTCGATAACTTAG
GCAAGATTTTAGAGCCACTGATCATCGTCTTTCTAGGCACAGTTGTAGGGGGGCTAGTTGTCGCGATGTACTTACCGATC
TTTAATCTTATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

80.75

98.039

0.792
  pilC Vibrio campbellii strain DS40M4

74.813

98.284

0.735
  pilC Acinetobacter baumannii D1279779

42.476

100

0.429
  pilC Acinetobacter baylyi ADP1

42.402

100

0.424
  pilC Legionella pneumophila strain ERS1305867

41.855

97.794

0.409
  pilC Pseudomonas stutzeri DSM 10701

40.347

99.02

0.4
  pilG Neisseria gonorrhoeae MS11

40.852

97.794

0.4
  pilG Neisseria meningitidis 44/76-A

40.602

97.794

0.397

Multiple sequence alignment