Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   SMA_0358 Genome accession   HE613569
Coordinates   375363..375851 (+) Length   162 a.a.
NCBI ID   CCF01649.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 370363..380851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0358 comX/sigX 375363..375851 (+) 489 CCF01649.1 Competence-specific sigma factor ComX Regulator
  SMA_0359 yclM 376049..377410 (-) 1362 CCF01650.1 Aspartokinase -
  SMA_0360 yniC 377504..378151 (+) 648 CCF01651.1 Hydrolase, haloacid dehalogenase-like family -
  SMA_0361 paaG 378361..379149 (+) 789 CCF01652.1 Trans-2,cis-3-Decenoyl-ACP isomerase -
  SMA_0362 fabT 379232..379699 (+) 468 CCF01653.1 Transcriptional regulator of fatty acid biosynthesis FabT -
  SMA_0363 fabH 379702..380676 (+) 975 CCF01654.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 19536.56 Da        Isoelectric Point: 9.3937

>NTDB_id=20336 SMA_0358 CCF01649.1 375363..375851(+) (comX/sigX) [Streptococcus macedonicus ACA-DC 198]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPNLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KRKFNQLPYEEISDVGHCLAQTRFLDLADYVAYKERLQAVEQRLGAGAKEKLAKVMRGERFEGKKAFLTKIEPFFTDFNS
NW

Nucleotide


Download         Length: 489 bp        

>NTDB_id=20336 SMA_0358 CCF01649.1 375363..375851(+) (comX/sigX) [Streptococcus macedonicus ACA-DC 198]
ATGATGGAAACATTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCTAATTTGTTGCAGG
ACGACTTGTCTCTTTATGCCTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAACGTAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAACAAGATTTCTGGATCT
GGCGGATTATGTGGCTTATAAGGAGCGGCTGCAGGCGGTTGAGCAGCGATTAGGAGCGGGAGCAAAAGAAAAACTAGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGGAAAAAGGCCTTCTTGACTAAAATTGAGCCTTTTTTTACTGACTTTAACTCT
AATTGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.