Detailed information NTG0020001

Bioinformatically predicted

Overview

• Name: pilA/pilA1
• Type: Machinery gene
• Locus tag: Locus_1
• Genome accession: AF079304
• Coordinates: 1013..1462 (+)
• Length: 149 a.a.
• NCBI ID: AAC28469.1
• Uniprot ID: -
• Organism: Eikenella corrodens VA1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1..6462

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Locus_0	pilA/pilA1	484..945 (+)	462	AAC28468.1	type IV pilin	Machinery gene
Locus_1	pilA/pilA1	1013..1462 (+)	450	AAC28469.1	type IV pilin	Machinery gene
Locus_2	pilB	1550..2152 (+)	603	AAC28470.1	putative fimbrial protein	-
Locus_3	hagA	2463..3326 (+)	864	AAC28471.1	putative hemagglutinin protein	-

Sequence

Protein

• Length: 149 a.a.
• Molecular weight: 15606.03 Da
• Isoelectric Point: 4.8776

>NTDB_id=20001 Locus_1 AAC28469.1 1013..1462(+) (pilA/pilA1) [Eikenella corrodens VA1]
MLKMKGFTLIELMIVIAIIGILAAIALPAYDSYVGRSQAVEGFKLTSGLRDDIASIVADTNAFPTAAMVAPNGAIGSIAS
SLDGKYVQNGGVTVTADTGVITVLFDQGVISGSNMQLIPMFNNANRTQLIQWQCGGTLNSRYLPSSCQS

Nucleotide

• Length: 450 bp

>NTDB_id=20001 Locus_1 AAC28469.1 1013..1462(+) (pilA/pilA1) [Eikenella corrodens VA1]
ATGTTAAAAATGAAGGGTTTTACTCTGATTGAGCTGATGATAGTTATTGCTATTATTGGCATTTTAGCAGCAATCGCTTT
ACCCGCTTATGATAGCTATGTTGGTCGTAGCCAAGCGGTTGAGGGATTTAAATTAACTAGTGGATTGCGTGATGATATTG
CTTCTATTGTGGCTGATACGAATGCTTTCCCAACAGCTGCTATGGTTGCCCCAAATGGGGCTATTGGCTCCATCGCTAGT
AGCTTAGATGGTAAGTATGTGCAAAATGGTGGAGTTACTGTTACTGCGGATACCGGGGTAATTACGGTGCTATTTGATCA
AGGTGTAATCTCTGGCTCAAATATGCAGTTAATTCCTATGTTTAATAACGCAAATAGAACGCAATTAATTCAATGGCAAT
GTGGGGGGACATTAAATAGTAGATATTTGCCATCAAGTTGCCAGTCATAG

Domains

Predicted by InterproScan.

• Pilin (bacterial filament) (Pilin) (36-148)

• Prokaryotic N-terminal methylation motif (N_methyl) (2-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA/pilA1	Eikenella corrodens VA1	53.247	100	0.55
pilE	Neisseria elongata subsp. glycolytica ATCC 29315	34.973	100	0.43
pilA	Vibrio cholerae strain A1552	37.5	100	0.383
pilA	Vibrio cholerae C6706	37.5	100	0.383
pilA/pilAII	Pseudomonas stutzeri DSM 10701	38	100	0.383
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	37.5	100	0.383
pilE	Neisseria gonorrhoeae strain FA1090	34.337	100	0.383
comP	Acinetobacter baylyi ADP1	36.538	100	0.383
pilA/pilAI	Pseudomonas stutzeri DSM 10701	37.333	100	0.376
pilA2	Legionella pneumophila strain ERS1305867	37.162	99.329	0.369
pilE	Neisseria gonorrhoeae MS11	32.53	100	0.362