Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   BTR42_RS01945 Genome accession   NZ_CP018822
Coordinates   339573..340058 (+) Length   161 a.a.
NCBI ID   WP_077496174.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus DSM 16831     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 334573..345058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTR42_RS01945 (BTR42_01675) comX/sigX 339573..340058 (+) 486 WP_077496174.1 sigma-70 family RNA polymerase sigma factor Regulator
  BTR42_RS01950 (BTR42_01680) - 340198..340464 (+) 267 WP_009853366.1 ACT domain-containing protein -
  BTR42_RS01955 (BTR42_01685) - 340476..341813 (+) 1338 WP_009853367.1 PFL family protein -
  BTR42_RS01965 (BTR42_01690) - 342037..342741 (+) 705 WP_039694351.1 histidine phosphatase family protein -
  BTR42_RS01970 (BTR42_01695) - 342725..343498 (+) 774 WP_009853369.1 M15 family metallopeptidase -
  BTR42_RS01975 (BTR42_01700) - 343495..344076 (+) 582 WP_012961370.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19380.34 Da        Isoelectric Point: 7.2415

>NTDB_id=176162 BTR42_RS01945 WP_077496174.1 339573..340058(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFCLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KRKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGVGAREKLAKVMRGERFEGKKAFLTQIEPFFNEFRE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=176162 BTR42_RS01945 WP_077496174.1 339573..340058(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus DSM 16831]
ATGATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCTGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGG
ACGACTTGTCCCTTTATGCCTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAACGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCT
GGCGGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGACTGGGAGTAGGGGCACGAGAGAAATTGGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAGGGAA
AAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.