Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | AL541_RS12705 | Genome accession | NZ_CP014040 |
| Coordinates | 2554318..2555187 (+) | Length | 289 a.a. |
| NCBI ID | WP_017635919.1 | Uniprot ID | A0A2I3C9C8 |
| Organism | Vibrio alginolyticus strain FDAARGOS_110 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2549318..2560187
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL541_RS12685 (AL541_21055) | nadC | 2549721..2550608 (+) | 888 | WP_017635915.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AL541_RS12690 (AL541_21060) | - | 2550871..2551314 (+) | 444 | WP_064354289.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| AL541_RS12695 (AL541_21065) | pilB | 2551321..2553006 (+) | 1686 | WP_104979679.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AL541_RS12700 (AL541_21070) | pilC | 2553030..2554253 (+) | 1224 | WP_017635918.1 | type II secretion system F family protein | Machinery gene |
| AL541_RS12705 (AL541_21075) | pilD | 2554318..2555187 (+) | 870 | WP_017635919.1 | A24 family peptidase | Machinery gene |
| AL541_RS12710 (AL541_21080) | coaE | 2555188..2555802 (+) | 615 | WP_017635920.1 | dephospho-CoA kinase | - |
| AL541_RS12715 (AL541_21085) | zapD | 2555830..2556570 (+) | 741 | WP_005373086.1 | cell division protein ZapD | - |
| AL541_RS12720 (AL541_21090) | yacG | 2556729..2556923 (+) | 195 | WP_017635922.1 | DNA gyrase inhibitor YacG | - |
| AL541_RS12725 (AL541_21095) | rplS | 2557578..2557931 (-) | 354 | WP_005379971.1 | 50S ribosomal protein L19 | - |
| AL541_RS12730 (AL541_21100) | trmD | 2557973..2558734 (-) | 762 | WP_005385420.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AL541_RS12735 (AL541_21105) | rimM | 2558762..2559310 (-) | 549 | WP_005379964.1 | ribosome maturation factor RimM | - |
| AL541_RS12740 (AL541_21110) | rpsP | 2559340..2559588 (-) | 249 | WP_005379962.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32563.76 Da Isoelectric Point: 6.8450
>NTDB_id=167830 AL541_RS12705 WP_017635919.1 2554318..2555187(+) (pilD) [Vibrio alginolyticus strain FDAARGOS_110]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV
Nucleotide
Download Length: 870 bp
>NTDB_id=167830 AL541_RS12705 WP_017635919.1 2554318..2555187(+) (pilD) [Vibrio alginolyticus strain FDAARGOS_110]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTATTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTTCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCAGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTGGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTATTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTTCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCAGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTGGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
91.349 |
100 |
0.913 |
| pilD | Vibrio cholerae strain A1552 |
73.264 |
99.654 |
0.73 |
| pilD | Acinetobacter baumannii D1279779 |
52.222 |
93.426 |
0.488 |
| pilD | Acinetobacter nosocomialis M2 |
51.852 |
93.426 |
0.484 |
| pilD | Neisseria gonorrhoeae MS11 |
47.653 |
95.848 |
0.457 |