Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   AL541_RS12655 Genome accession   NZ_CP014040
Coordinates   2540825..2541439 (+) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FDAARGOS_110     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2535825..2546439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL541_RS12635 (AL541_21005) - 2536107..2537024 (-) 918 WP_005380000.1 ABC transporter ATP-binding protein -
  AL541_RS12640 (AL541_21010) - 2537275..2538945 (-) 1671 WP_104979677.1 SulP family inorganic anion transporter -
  AL541_RS12645 (AL541_21015) can 2539227..2539895 (+) 669 WP_005379996.1 carbonate dehydratase -
  AL541_RS12650 (AL541_21020) hpt 2539975..2540505 (-) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  AL541_RS12655 (AL541_21025) opaR 2540825..2541439 (+) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  AL541_RS12660 (AL541_21030) lpdA 2541585..2543012 (-) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  AL541_RS12665 (AL541_21035) aceF 2543280..2545172 (-) 1893 WP_033905589.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=167827 AL541_RS12655 WP_005379994.1 2540825..2541439(+) (opaR) [Vibrio alginolyticus strain FDAARGOS_110]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=167827 AL541_RS12655 WP_005379994.1 2540825..2541439(+) (opaR) [Vibrio alginolyticus strain FDAARGOS_110]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTAGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
TTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACACCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711

Multiple sequence alignment