Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AL510_RS08040 | Genome accession | NZ_CP014027 |
| Coordinates | 1569688..1570113 (+) | Length | 141 a.a. |
| NCBI ID | WP_011285575.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain FDAARGOS_149 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1559062..1599905 | 1569688..1570113 | within | 0 |
Gene organization within MGE regions
Location: 1559062..1599905
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL510_RS07950 (AL510_07720) | - | 1559062..1559682 (-) | 621 | WP_002989605.1 | DUF3862 domain-containing protein | - |
| AL510_RS07955 (AL510_07725) | - | 1560045..1561133 (-) | 1089 | WP_011054595.1 | site-specific integrase | - |
| AL510_RS07960 (AL510_07730) | - | 1561254..1562147 (-) | 894 | WP_011285585.1 | P63C domain-containing protein | - |
| AL510_RS07965 (AL510_07735) | - | 1562183..1563007 (-) | 825 | WP_011285584.1 | XRE family transcriptional regulator | - |
| AL510_RS07970 (AL510_09555) | - | 1563364..1563522 (+) | 159 | WP_011285583.1 | hypothetical protein | - |
| AL510_RS07975 (AL510_07740) | - | 1563552..1564151 (-) | 600 | WP_011284882.1 | hypothetical protein | - |
| AL510_RS07980 (AL510_07745) | - | 1564205..1564414 (+) | 210 | WP_011284881.1 | hypothetical protein | - |
| AL510_RS07985 (AL510_07750) | - | 1564403..1564789 (-) | 387 | WP_011054589.1 | hypothetical protein | - |
| AL510_RS07990 (AL510_07755) | - | 1564863..1565063 (+) | 201 | WP_002992770.1 | helix-turn-helix domain-containing protein | - |
| AL510_RS07995 (AL510_07760) | - | 1565173..1565382 (-) | 210 | WP_011017885.1 | hypothetical protein | - |
| AL510_RS09740 | - | 1565513..1565752 (-) | 240 | WP_227874181.1 | hypothetical protein | - |
| AL510_RS09745 (AL510_09560) | - | 1565986..1566174 (+) | 189 | Protein_1476 | XRE family transcriptional regulator | - |
| AL510_RS08010 (AL510_07770) | - | 1566188..1567018 (+) | 831 | WP_009881060.1 | phage replisome organizer N-terminal domain-containing protein | - |
| AL510_RS08015 (AL510_07775) | - | 1567005..1567787 (+) | 783 | WP_011285581.1 | ATP-binding protein | - |
| AL510_RS08020 (AL510_07780) | - | 1567928..1568281 (+) | 354 | WP_011285579.1 | hypothetical protein | - |
| AL510_RS08025 (AL510_07785) | - | 1568262..1568516 (+) | 255 | WP_011285578.1 | hypothetical protein | - |
| AL510_RS08030 (AL510_07790) | - | 1568538..1569020 (+) | 483 | WP_011285577.1 | siphovirus Gp157 family protein | - |
| AL510_RS08035 (AL510_07795) | - | 1569021..1569695 (+) | 675 | WP_011285576.1 | ERF family protein | - |
| AL510_RS08040 (AL510_07800) | ssb | 1569688..1570113 (+) | 426 | WP_011285575.1 | single-stranded DNA-binding protein | Machinery gene |
| AL510_RS08045 (AL510_07805) | - | 1570119..1570322 (+) | 204 | WP_011106686.1 | hypothetical protein | - |
| AL510_RS08050 (AL510_07810) | - | 1570322..1570762 (+) | 441 | WP_011285574.1 | RusA family crossover junction endodeoxyribonuclease | - |
| AL510_RS08055 (AL510_07815) | - | 1570759..1571115 (+) | 357 | WP_011284873.1 | hypothetical protein | - |
| AL510_RS09835 (AL510_07820) | - | 1571112..1571357 (+) | 246 | WP_011285573.1 | hypothetical protein | - |
| AL510_RS08065 (AL510_07825) | - | 1571357..1571593 (+) | 237 | WP_002995955.1 | DUF3310 domain-containing protein | - |
| AL510_RS09560 | - | 1571590..1571760 (+) | 171 | WP_002995952.1 | hypothetical protein | - |
| AL510_RS08070 (AL510_07830) | - | 1571757..1572041 (+) | 285 | WP_011018134.1 | hypothetical protein | - |
| AL510_RS08075 (AL510_07835) | - | 1572043..1572675 (+) | 633 | WP_011018133.1 | N-6 DNA methylase | - |
| AL510_RS08080 (AL510_07840) | - | 1572678..1573202 (+) | 525 | WP_011285572.1 | DUF1642 domain-containing protein | - |
| AL510_RS08085 (AL510_07845) | - | 1573199..1573465 (+) | 267 | WP_011018131.1 | hypothetical protein | - |
| AL510_RS08090 (AL510_07850) | - | 1573751..1574185 (+) | 435 | WP_011054810.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| AL510_RS08095 (AL510_07855) | - | 1574795..1575175 (+) | 381 | WP_011285571.1 | hypothetical protein | - |
| AL510_RS08100 (AL510_07860) | - | 1575165..1576439 (+) | 1275 | WP_009880266.1 | PBSX family phage terminase large subunit | - |
| AL510_RS08105 (AL510_07865) | - | 1576439..1577764 (+) | 1326 | WP_011285570.1 | phage portal protein | - |
| AL510_RS08110 (AL510_07870) | - | 1577733..1578641 (+) | 909 | WP_011285569.1 | minor capsid protein | - |
| AL510_RS08115 (AL510_07875) | - | 1578648..1578917 (+) | 270 | WP_011285568.1 | hypothetical protein | - |
| AL510_RS09770 | - | 1578919..1579053 (+) | 135 | WP_015055956.1 | hypothetical protein | - |
| AL510_RS08120 (AL510_07880) | - | 1579162..1579731 (+) | 570 | WP_009880262.1 | DUF4355 domain-containing protein | - |
| AL510_RS08125 (AL510_07885) | - | 1579750..1580640 (+) | 891 | WP_009880261.1 | hypothetical protein | - |
| AL510_RS08130 (AL510_07890) | - | 1580653..1580946 (+) | 294 | WP_009880260.1 | HeH/LEM domain-containing protein | - |
| AL510_RS08135 (AL510_07895) | - | 1580960..1581304 (+) | 345 | WP_009880259.1 | hypothetical protein | - |
| AL510_RS08140 (AL510_07900) | - | 1581301..1581612 (+) | 312 | WP_011285567.1 | hypothetical protein | - |
| AL510_RS08145 (AL510_07905) | - | 1581609..1582004 (+) | 396 | WP_009880257.1 | hypothetical protein | - |
| AL510_RS08150 (AL510_07910) | - | 1582006..1582416 (+) | 411 | WP_009880256.1 | DUF5072 family protein | - |
| AL510_RS08155 (AL510_07915) | - | 1582428..1582934 (+) | 507 | WP_009880255.1 | phage major tail protein, TP901-1 family | - |
| AL510_RS08160 (AL510_07920) | - | 1582947..1583264 (+) | 318 | WP_009880254.1 | hypothetical protein | - |
| AL510_RS08165 (AL510_07925) | - | 1583237..1583695 (+) | 459 | WP_009880253.1 | hypothetical protein | - |
| AL510_RS08170 (AL510_07930) | - | 1583688..1585493 (+) | 1806 | WP_011054802.1 | phage tail protein | - |
| AL510_RS08175 (AL510_07935) | - | 1585494..1586978 (+) | 1485 | WP_009880250.1 | distal tail protein Dit | - |
| AL510_RS08180 (AL510_07940) | - | 1586979..1590419 (+) | 3441 | WP_011285566.1 | glucosaminidase domain-containing protein | - |
| AL510_RS08185 (AL510_07945) | - | 1590424..1592286 (+) | 1863 | WP_015055954.1 | DUF859 family phage minor structural protein | - |
| AL510_RS08190 (AL510_07950) | - | 1592297..1592644 (+) | 348 | WP_011285564.1 | DUF1366 domain-containing protein | - |
| AL510_RS09775 | - | 1592658..1592780 (+) | 123 | WP_015055953.1 | hypothetical protein | - |
| AL510_RS08195 (AL510_07955) | - | 1592794..1593117 (+) | 324 | WP_015055952.1 | hypothetical protein | - |
| AL510_RS08200 (AL510_07960) | - | 1593117..1593449 (+) | 333 | WP_011285562.1 | phage holin | - |
| AL510_RS08205 (AL510_07965) | - | 1593451..1594215 (+) | 765 | WP_011285561.1 | CHAP domain-containing protein | - |
| AL510_RS08210 (AL510_07970) | - | 1594227..1594829 (+) | 603 | WP_011054796.1 | hypothetical protein | - |
| AL510_RS08215 (AL510_07975) | - | 1594840..1595613 (+) | 774 | WP_011054795.1 | hypothetical protein | - |
| AL510_RS08220 (AL510_07980) | - | 1595623..1595844 (+) | 222 | WP_009880241.1 | hypothetical protein | - |
| AL510_RS08225 (AL510_07985) | - | 1595844..1596503 (+) | 660 | WP_009880240.1 | hypothetical protein | - |
| AL510_RS08230 (AL510_07990) | speA | 1596625..1597380 (-) | 756 | WP_011285560.1 | streptococcal pyrogenic exotoxin SpeA | - |
| AL510_RS08235 (AL510_07995) | prx | 1597600..1597788 (+) | 189 | WP_011285559.1 | hypothetical protein | Regulator |
| AL510_RS08245 (AL510_08005) | - | 1598379..1598993 (+) | 615 | WP_011285558.1 | TVP38/TMEM64 family protein | - |
| AL510_RS08250 (AL510_08010) | - | 1599120..1599905 (-) | 786 | WP_010922378.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15995.63 Da Isoelectric Point: 4.5748
>NTDB_id=167535 AL510_RS08040 WP_011285575.1 1569688..1570113(+) (ssb) [Streptococcus pyogenes strain FDAARGOS_149]
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGVTGRIQTR
NYENQQEQRVYVTEVVAESFQMLESRNSQQQSGQDNSSQNDNSQPFGNSNPMDISDDDLPF
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGVTGRIQTR
NYENQQEQRVYVTEVVAESFQMLESRNSQQQSGQDNSSQNDNSQPFGNSNPMDISDDDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=167535 AL510_RS08040 WP_011285575.1 1569688..1570113(+) (ssb) [Streptococcus pyogenes strain FDAARGOS_149]
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGAACAACGTGTCTATGTGACGGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTCGAAA
TAGCCAGCAACAATCTGGTCAAGATAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATA
TTTCAGACGATGATCTGCCGTTTTAA
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGAACAACGTGTCTATGTGACGGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTCGAAA
TAGCCAGCAACAATCTGGTCAAGATAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATA
TTTCAGACGATGATCTGCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.294 |
100 |
0.667 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.07 |
100 |
0.66 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.972 |
100 |
0.44 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
43.262 |
100 |
0.433 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus mitis SK321 |
43.262 |
100 |
0.433 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
51.786 |
79.433 |
0.411 |
| ssbA | Streptococcus mutans UA159 |
40.426 |
100 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
29.379 |
100 |
0.369 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
49.524 |
74.468 |
0.369 |