Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AL480_RS13295 Genome accession   NZ_CP014014
Coordinates   2759179..2760438 (+) Length   419 a.a.
NCBI ID   WP_033833111.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain FDAARGOS_92     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2754179..2765438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL480_RS13275 (AL480_13275) pilR 2754385..2755758 (+) 1374 WP_033833106.1 sigma-54 dependent transcriptional regulator Regulator
  AL480_RS13280 (AL480_13280) pilB 2755885..2757618 (-) 1734 WP_033833107.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AL480_RS13285 (AL480_13285) pilA/pilAI 2757841..2758248 (-) 408 WP_033833108.1 pilin Machinery gene
  AL480_RS13290 (AL480_13290) - 2758398..2758826 (-) 429 WP_033833109.1 pilin -
  AL480_RS13295 (AL480_13295) pilC 2759179..2760438 (+) 1260 WP_033833111.1 type II secretion system F family protein Machinery gene
  AL480_RS13300 (AL480_13300) - 2760446..2761309 (+) 864 WP_005410800.1 A24 family peptidase -
  AL480_RS13305 (AL480_13305) coaE 2761321..2761932 (+) 612 WP_033833112.1 dephospho-CoA kinase -
  AL480_RS13310 (AL480_13310) - 2762125..2762511 (-) 387 WP_104920827.1 hypothetical protein -
  AL480_RS13315 (AL480_13315) - 2762994..2764322 (-) 1329 WP_005410803.1 HAMP domain-containing sensor histidine kinase -
  AL480_RS13320 (AL480_13320) - 2764327..2765004 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45938.38 Da        Isoelectric Point: 10.1408

>NTDB_id=167196 AL480_RS13295 WP_033833111.1 2759179..2760438(+) (pilC) [Stenotrophomonas maltophilia strain FDAARGOS_92]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPIKPKD
IAFFSRQMATMMKSGVPIVSSLDIIASGHKNPRMKKLVDTIRTDIEGGSSMHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLVAIGTAVALVMSYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=167196 AL480_RS13295 WP_033833111.1 2759179..2760438(+) (pilC) [Stenotrophomonas maltophilia strain FDAARGOS_92]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGTGCCACCATGGAACTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGTCGAAGCCGCTGTTCGGCGCCGCCGGCAGCCCGATCAAGCCCAAGGAC
ATCGCCTTCTTCAGTCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTATCGTCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTGGACACCATCCGCACCGACATCGAAGGCGGCTCTTCGATGCATGAAG
CCATCAGCAAGCACCCGGTGCAGTTCGACGAGCTTTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAAAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCGATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTCCCGCAGTTCGAGGACGTGTTCA
AGAGCTTTGGTGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAACCTCTCGAGATTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTGGTCGCGATCGGTACGGCGGTCGCTCTGGTCATGTCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGCGCCACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCCGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.556

94.511

0.525
  pilC Legionella pneumophila strain ERS1305867

51.88

95.227

0.494
  pilC Acinetobacter baylyi ADP1

50.86

97.136

0.494
  pilC Acinetobacter baumannii D1279779

50.126

94.749

0.475
  pilG Neisseria gonorrhoeae MS11

44.888

95.704

0.43
  pilG Neisseria meningitidis 44/76-A

44.638

95.704

0.427
  pilC Vibrio cholerae strain A1552

41.379

96.897

0.401
  pilC Vibrio campbellii strain DS40M4

41.147

95.704

0.394
  pilC Thermus thermophilus HB27

37.562

95.943

0.36

Multiple sequence alignment