Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AL480_RS13275 Genome accession   NZ_CP014014
Coordinates   2754385..2755758 (+) Length   457 a.a.
NCBI ID   WP_033833106.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain FDAARGOS_92     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2749385..2760758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL480_RS13260 (AL480_13260) sucD 2750287..2751162 (-) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -
  AL480_RS13265 (AL480_13265) sucC 2751184..2752353 (-) 1170 WP_004154430.1 ADP-forming succinate--CoA ligase subunit beta -
  AL480_RS13270 (AL480_13270) - 2752711..2754324 (+) 1614 WP_005414304.1 ATP-binding protein -
  AL480_RS13275 (AL480_13275) pilR 2754385..2755758 (+) 1374 WP_033833106.1 sigma-54 dependent transcriptional regulator Regulator
  AL480_RS13280 (AL480_13280) pilB 2755885..2757618 (-) 1734 WP_033833107.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AL480_RS13285 (AL480_13285) pilA/pilAI 2757841..2758248 (-) 408 WP_033833108.1 pilin Machinery gene
  AL480_RS13290 (AL480_13290) - 2758398..2758826 (-) 429 WP_033833109.1 pilin -
  AL480_RS13295 (AL480_13295) pilC 2759179..2760438 (+) 1260 WP_033833111.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49558.83 Da        Isoelectric Point: 6.4407

>NTDB_id=167193 AL480_RS13275 WP_033833106.1 2754385..2755758(+) (pilR) [Stenotrophomonas maltophilia strain FDAARGOS_92]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPTAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYPFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRTPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=167193 AL480_RS13275 WP_033833106.1 2754385..2755758(+) (pilR) [Stenotrophomonas maltophilia strain FDAARGOS_92]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCTGTGGAGGCACTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCCGCACCGGGCCCCACCG
CTGAACAGGGCGGTCGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCATGCCCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCAGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGTTTCAGCGGCGCACACGCTGACAAGCCTGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCACTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CAACGAGGAGCCGGTGGATGTCCGCATCCTCTCGGCCACCCACAAGGACCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCCGAA
CTGGCCGCCGCCGTGCTGGCCCGCCTGGCCCGCAGCCACGGCCGTGCCACCCCGCTGCTGGCGCCCTCGGCGCTGGAAGC
GCTGGCGCAGTACCCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCGCAGCACGCGCCGCGTACGCCGGGCAGTGCGGCGCCCGCCGAAGCCGTG
GCCGACCTGCAGCCGGGCAGTGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

62.061

99.781

0.619
  pilR Acinetobacter baumannii strain A118

47.732

100

0.484

Multiple sequence alignment