Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   AU077_RS08495 Genome accession   NZ_CP013688
Coordinates   1699843..1700328 (-) Length   161 a.a.
NCBI ID   WP_082306748.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1699843..1711879 1699843..1700328 within 0


Gene organization within MGE regions


Location: 1699843..1711879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS08495 (AU077_08495) comX/sigX 1699843..1700328 (-) 486 WP_082306748.1 sigma-70 family RNA polymerase sigma factor Regulator
  AU077_RS08525 (AU077_08525) - 1706218..1706502 (-) 285 WP_230937540.1 hypothetical protein -
  AU077_RS12000 - 1706566..1706700 (-) 135 WP_006531373.1 hypothetical protein -
  AU077_RS10885 - 1706746..1707030 (-) 285 WP_230937619.1 ArsR/SmtB family transcription factor -
  AU077_RS08530 (AU077_08530) - 1707096..1707710 (-) 615 WP_335338015.1 CadD family cadmium resistance transporter -
  AU077_RS08535 (AU077_08535) - 1708417..1710528 (-) 2112 WP_058621912.1 heavy metal translocating P-type ATPase -
  AU077_RS08540 (AU077_08540) tcrZ 1710667..1710873 (-) 207 WP_002294571.1 copper chaperone TcrZ -
  AU077_RS08545 (AU077_08545) - 1710953..1711461 (-) 509 Protein_1735 HAD-IC family P-type ATPase -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19369.46 Da        Isoelectric Point: 8.6128

>NTDB_id=164068 AU077_RS08495 WP_082306748.1 1699843..1700328(-) (comX/sigX) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFCLLQEKPNLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KCKFNQLPYEEISDVGHCLAQTRFLDLADYVAYKERLQAVEQRLGAGAKEKLAKVMRGERFEGKKAFLTKIEPFFNEFRE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=164068 AU077_RS08495 WP_082306748.1 1699843..1700328(-) (comX/sigX) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGATGGAAACATTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCTGTCTCCTGCAAGAAAAGCCTAATTTGTTGCAGG
ACGACTTGTCTCTTTATGCCTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAATGTAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAACAAGATTTCTGGATCT
GGCGGATTATGTGGCTTATAAGGAGCGGCTGCAGGCGGTTGAGCAGCGATTAGGAGCGGGAGCAAAAGAAAAACTAGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGGAAAAAGGCCTTCTTGACTAAAATTGAGCCCTTCTTTAATGAGTTTAGGGAA
AAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.