Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   AU077_RS08095 Genome accession   NZ_CP013688
Coordinates   1617775..1618263 (-) Length   162 a.a.
NCBI ID   WP_014293980.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1612775..1623263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS08070 (AU077_08070) - 1612949..1613923 (-) 975 WP_014293985.1 beta-ketoacyl-ACP synthase III -
  AU077_RS08075 (AU077_08075) - 1613926..1614360 (-) 435 WP_012961424.1 MarR family winged helix-turn-helix transcriptional regulator -
  AU077_RS08080 (AU077_08080) - 1614476..1615264 (-) 789 WP_014293983.1 enoyl-CoA hydratase -
  AU077_RS08085 (AU077_08085) - 1615474..1616121 (-) 648 WP_058621887.1 HAD family hydrolase -
  AU077_RS08090 (AU077_08090) - 1616215..1617576 (+) 1362 WP_014293981.1 aspartate kinase -
  AU077_RS08095 (AU077_08095) comX/sigX 1617775..1618263 (-) 489 WP_014293980.1 sigma-70 family RNA polymerase sigma factor Regulator
  AU077_RS08100 (AU077_08100) - 1618598..1619854 (+) 1257 WP_014293928.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 19536.56 Da        Isoelectric Point: 9.3937

>NTDB_id=164064 AU077_RS08095 WP_014293980.1 1617775..1618263(-) (comX/sigX) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPNLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KRKFNQLPYEEISDVGHCLAQTRFLDLADYVAYKERLQAVEQRLGAGAKEKLAKVMRGERFEGKKAFLTKIEPFFTDFNS
NW

Nucleotide


Download         Length: 489 bp        

>NTDB_id=164064 AU077_RS08095 WP_014293980.1 1617775..1618263(-) (comX/sigX) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGATGGAAACATTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCTAATTTGTTGCAGG
ACGACTTGTCTCTTTATGCCTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAACGTAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAACAAGATTTCTGGATCT
GGCGGATTATGTGGCTTATAAGGAGCGGCTGCAGGCGGTTGAGCAGCGATTAGGAGCGGGAGCAAAAGAAAAACTAGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGGAAAAAGGCCTTCTTGACTAAAATTGAGCCTTTTTTTACTGACTTTAACTCT
AATTGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.