Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | APY30_RS17035 | Genome accession | NZ_CP013006 |
| Coordinates | 3760884..3761312 (-) | Length | 142 a.a. |
| NCBI ID | WP_005921364.1 | Uniprot ID | - |
| Organism | Xanthomonas citri pv. malvacearum strain XcmN1003 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3755884..3766312
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APY30_RS17015 (APY30_16255) | pilR | 3756510..3757964 (+) | 1455 | WP_033836745.1 | sigma-54 dependent transcriptional regulator | Regulator |
| APY30_RS17020 (APY30_16260) | - | 3758151..3758318 (-) | 168 | WP_033836746.1 | hypothetical protein | - |
| APY30_RS17025 (APY30_16265) | pilB | 3758596..3760332 (-) | 1737 | WP_033836748.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| APY30_RS17030 | pilA2 | 3760374..3760787 (-) | 414 | WP_005921365.1 | pilin | Machinery gene |
| APY30_RS17035 (APY30_16270) | comP | 3760884..3761312 (-) | 429 | WP_005921364.1 | pilin | Machinery gene |
| APY30_RS17040 (APY30_16275) | pilC | 3761657..3762916 (+) | 1260 | WP_033836749.1 | type II secretion system F family protein | Machinery gene |
| APY30_RS17045 (APY30_16280) | - | 3762923..3763786 (+) | 864 | WP_003491180.1 | A24 family peptidase | - |
| APY30_RS17050 (APY30_16285) | coaE | 3763800..3764408 (+) | 609 | WP_005915836.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14513.65 Da Isoelectric Point: 8.4798
>NTDB_id=159125 APY30_RS17035 WP_005921364.1 3760884..3761312(-) (comP) [Xanthomonas citri pv. malvacearum strain XcmN1003]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGGANSAVGTTWTCTGSGSQSKYYPAECRR
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGGANSAVGTTWTCTGSGSQSKYYPAECRR
Nucleotide
Download Length: 429 bp
>NTDB_id=159125 APY30_RS17035 WP_005921364.1 3760884..3761312(-) (comP) [Xanthomonas citri pv. malvacearum strain XcmN1003]
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCCGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGAACCGTTTT
GACCTATGCTCCGACAGTGGGCGGTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACCGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCCGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGCTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGAACCGTTTT
GACCTATGCTCCGACAGTGGGCGGTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACCGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
54.305 |
100 |
0.577 |
| pilA2 | Legionella pneumophila str. Paris |
55.319 |
99.296 |
0.549 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
54.61 |
99.296 |
0.542 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
41.463 |
100 |
0.479 |
| pilA | Pseudomonas aeruginosa PAK |
37.58 |
100 |
0.415 |
| pilA/pilA1 | Eikenella corrodens VA1 |
38.411 |
100 |
0.408 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
34.94 |
100 |
0.408 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
40.278 |
100 |
0.408 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
40.559 |
100 |
0.408 |
| pilA | Haemophilus influenzae 86-028NP |
38.971 |
95.775 |
0.373 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
40.31 |
90.845 |
0.366 |