Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FORC17_RS02795 | Genome accession | NZ_CP012739 |
| Coordinates | 568866..569288 (-) | Length | 140 a.a. |
| NCBI ID | WP_065090098.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain FORC_017 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 563866..574288
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC17_RS02775 (FORC17_0484) | coaE | 564321..564929 (-) | 609 | WP_065090095.1 | dephospho-CoA kinase | - |
| FORC17_RS02780 (FORC17_0485) | pilD | 564931..565800 (-) | 870 | WP_065090096.1 | prepilin peptidase | Machinery gene |
| FORC17_RS02785 (FORC17_0486) | pilC | 565894..567120 (-) | 1227 | WP_011079549.1 | type II secretion system F family protein | Machinery gene |
| FORC17_RS02790 (FORC17_0487) | pilB | 567169..568857 (-) | 1689 | WP_065090097.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FORC17_RS02795 (FORC17_0488) | pilA | 568866..569288 (-) | 423 | WP_065090098.1 | type IV pilin protein | Machinery gene |
| FORC17_RS02800 (FORC17_0489) | nadC | 569511..570398 (-) | 888 | WP_065090099.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FORC17_RS02805 (FORC17_0490) | ampD | 570491..571063 (+) | 573 | WP_011079553.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FORC17_RS02810 (FORC17_0491) | pdhR | 571452..572219 (+) | 768 | WP_011079554.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 140 a.a. Molecular weight: 14669.86 Da Isoelectric Point: 9.7249
>NTDB_id=157437 FORC17_RS02795 WP_065090098.1 568866..569288(-) (pilA) [Vibrio vulnificus strain FORC_017]
MKKLHKTKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVTKSEVASAVASLKSVITPAELYYQENGAFPANDTELATVG
INSSSIQNGTLTFTSSAIALTMTSPSGAKATITREATGWKCAVSGLKDKSNSPKGCPQSN
MKKLHKTKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVTKSEVASAVASLKSVITPAELYYQENGAFPANDTELATVG
INSSSIQNGTLTFTSSAIALTMTSPSGAKATITREATGWKCAVSGLKDKSNSPKGCPQSN
Nucleotide
Download Length: 423 bp
>NTDB_id=157437 FORC17_RS02795 WP_065090098.1 568866..569288(-) (pilA) [Vibrio vulnificus strain FORC_017]
ATGAAGAAATTACACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAGTGGCGATTATTGGTGT
GCTATCAGCAATTGCTGTTCCAGCTTATCAAAATTACGTCACAAAAAGCGAAGTAGCATCTGCCGTCGCTTCACTAAAAT
CCGTGATAACACCAGCCGAACTCTATTATCAAGAGAATGGAGCTTTCCCTGCTAATGATACAGAGCTAGCAACCGTAGGC
ATTAACTCGTCATCAATACAGAACGGGACATTGACATTTACCTCCAGCGCAATTGCGTTAACAATGACCTCTCCTAGTGG
AGCAAAAGCAACAATCACAAGAGAAGCAACTGGTTGGAAGTGCGCGGTTTCAGGCTTGAAAGACAAAAGCAACTCTCCCA
AAGGTTGCCCTCAGAGTAACTAG
ATGAAGAAATTACACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAGTGGCGATTATTGGTGT
GCTATCAGCAATTGCTGTTCCAGCTTATCAAAATTACGTCACAAAAAGCGAAGTAGCATCTGCCGTCGCTTCACTAAAAT
CCGTGATAACACCAGCCGAACTCTATTATCAAGAGAATGGAGCTTTCCCTGCTAATGATACAGAGCTAGCAACCGTAGGC
ATTAACTCGTCATCAATACAGAACGGGACATTGACATTTACCTCCAGCGCAATTGCGTTAACAATGACCTCTCCTAGTGG
AGCAAAAGCAACAATCACAAGAGAAGCAACTGGTTGGAAGTGCGCGGTTTCAGGCTTGAAAGACAAAAGCAACTCTCCCA
AAGGTTGCCCTCAGAGTAACTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
54.962 |
93.571 |
0.514 |
| pilA | Pseudomonas aeruginosa PAK |
40.268 |
100 |
0.429 |
| pilA | Vibrio cholerae C6706 |
38.816 |
100 |
0.421 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
38.816 |
100 |
0.421 |
| pilA | Vibrio cholerae strain A1552 |
38.816 |
100 |
0.421 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
37.762 |
100 |
0.386 |
| pilA2 | Legionella pneumophila str. Paris |
37.762 |
100 |
0.386 |
| comP | Acinetobacter baylyi ADP1 |
35.417 |
100 |
0.364 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
41.129 |
88.571 |
0.364 |