Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FORC17_RS02785 Genome accession   NZ_CP012739
Coordinates   565894..567120 (-) Length   408 a.a.
NCBI ID   WP_011079549.1    Uniprot ID   A0A3Q0L406
Organism   Vibrio vulnificus strain FORC_017     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 560894..572120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC17_RS02745 (FORC17_0478) rpsP 561044..561292 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  FORC17_RS02750 (FORC17_0479) rimM 561308..561856 (+) 549 WP_061058912.1 ribosome maturation factor RimM -
  FORC17_RS02755 (FORC17_0480) trmD 561884..562633 (+) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FORC17_RS02760 (FORC17_0481) rplS 562675..563028 (+) 354 WP_011079544.1 50S ribosomal protein L19 -
  FORC17_RS02765 (FORC17_0482) yacG 563291..563485 (-) 195 WP_065090094.1 DNA gyrase inhibitor YacG -
  FORC17_RS02770 (FORC17_0483) zapD 563548..564288 (-) 741 WP_011079546.1 cell division protein ZapD -
  FORC17_RS02775 (FORC17_0484) coaE 564321..564929 (-) 609 WP_065090095.1 dephospho-CoA kinase -
  FORC17_RS02780 (FORC17_0485) pilD 564931..565800 (-) 870 WP_065090096.1 prepilin peptidase Machinery gene
  FORC17_RS02785 (FORC17_0486) pilC 565894..567120 (-) 1227 WP_011079549.1 type II secretion system F family protein Machinery gene
  FORC17_RS02790 (FORC17_0487) pilB 567169..568857 (-) 1689 WP_065090097.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FORC17_RS02795 (FORC17_0488) pilA 568866..569288 (-) 423 WP_065090098.1 type IV pilin protein Machinery gene
  FORC17_RS02800 (FORC17_0489) nadC 569511..570398 (-) 888 WP_065090099.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FORC17_RS02805 (FORC17_0490) ampD 570491..571063 (+) 573 WP_011079553.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45253.58 Da        Isoelectric Point: 10.3569

>NTDB_id=157435 FORC17_RS02785 WP_011079549.1 565894..567120(-) (pilC) [Vibrio vulnificus strain FORC_017]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=157435 FORC17_RS02785 WP_011079549.1 565894..567120(-) (pilC) [Vibrio vulnificus strain FORC_017]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAAGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTTTTCACGAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTCAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCAGGTACGCCGTTATCGAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGTCTCGCTTTTTATCGGGAA
AAAAATGAGCAGTTGCGAGCAAAAGTGATCAAGGCGCTAATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGCGTCTC
TTATTTAATGCTGACCAAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGCAGTTGGTTTTTCATTACGTTGTTCAGTGCTATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCAGTGATTGGAGG
GGTCTTATCCAAAGCGGCGATTGCCAAATTTAGTCGCACATTGGCCACCAGTTTCAGCGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTACATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCTGCC
GGGATGCCAATGTACATCGCCATGCGCAACAGCCTTGCTTTCCCAGAATTGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTGAACAAGATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTGGGCGTTGTCGTCGGCGGATTGGTCACCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L406

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.5

98.039

0.77
  pilC Vibrio campbellii strain DS40M4

74.813

98.284

0.735
  pilC Pseudomonas stutzeri DSM 10701

41.584

99.02

0.412
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

40

100

0.402
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baylyi ADP1

40.852

97.794

0.4
  pilC Legionella pneumophila strain ERS1305867

40.099

99.02

0.397

Multiple sequence alignment