Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | AK825_RS01710 | Genome accession | NZ_CP012533 |
| Coordinates | 397334..398455 (-) | Length | 373 a.a. |
| NCBI ID | WP_068034204.1 | Uniprot ID | - |
| Organism | Psychrobacter sp. P11G5 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 392334..403455
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AK825_RS01680 (AK825_01680) | - | 393057..393392 (+) | 336 | WP_068034194.1 | c-type cytochrome | - |
| AK825_RS01685 (AK825_01685) | - | 393727..394395 (+) | 669 | WP_068034196.1 | c-type cytochrome | - |
| AK825_RS01690 (AK825_01690) | - | 394545..395687 (+) | 1143 | WP_068034198.1 | hypothetical protein | - |
| AK825_RS01695 (AK825_01695) | - | 395675..396028 (+) | 354 | WP_227514099.1 | RnfH family protein | - |
| AK825_RS01700 (AK825_01700) | bamE | 396039..396473 (-) | 435 | WP_082787136.1 | outer membrane protein assembly factor BamE | - |
| AK825_RS01705 (AK825_01705) | fur | 396797..397231 (+) | 435 | WP_068034202.1 | ferric iron uptake transcriptional regulator | - |
| AK825_RS01710 (AK825_01710) | pilU | 397334..398455 (-) | 1122 | WP_068034204.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| AK825_RS01715 (AK825_01715) | pilT | 398541..399596 (-) | 1056 | WP_068034206.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| AK825_RS01720 (AK825_01720) | - | 399945..400688 (+) | 744 | WP_068038889.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| AK825_RS01725 (AK825_01725) | - | 400766..402040 (-) | 1275 | WP_068034208.1 | hemolysin family protein | - |
Sequence
Protein
Download Length: 373 a.a. Molecular weight: 41661.74 Da Isoelectric Point: 6.4321
>NTDB_id=155008 AK825_RS01710 WP_068034204.1 397334..398455(-) (pilU) [Psychrobacter sp. P11G5]
MDFDKLLQLMVKKNGSDLFITAGVAPSMKINGTICPVGQAPLTGEQTLLLVKSLMTYNQQKEFEDTNECQFAISDKSQLA
RFRVSAFMQRDMAGMVLRKIENKIPTVEELRLPPSLKELAMRKRGIILLVGATGTGKSTTLASMIGHRNQNSHGHIITIE
DPIEFVHEHKGCIITQREVGVDTLSFEAGLKNTLRQAPDVILIGEIRNREVMDYAIQYAETGHLVFATLHANNANQAIDR
IIHFFEADRHNQLFMDLSLNLQAIVAQQLIPTPDGKGYRAAIEVLLNSQLISDYIRKGELHEIKEVMTRSRDSGMQTFDQ
ALFDLYENGDITYQDAIKHADSPNDLRLKIKLNSKNGSKDIDENASGLSLNIG
MDFDKLLQLMVKKNGSDLFITAGVAPSMKINGTICPVGQAPLTGEQTLLLVKSLMTYNQQKEFEDTNECQFAISDKSQLA
RFRVSAFMQRDMAGMVLRKIENKIPTVEELRLPPSLKELAMRKRGIILLVGATGTGKSTTLASMIGHRNQNSHGHIITIE
DPIEFVHEHKGCIITQREVGVDTLSFEAGLKNTLRQAPDVILIGEIRNREVMDYAIQYAETGHLVFATLHANNANQAIDR
IIHFFEADRHNQLFMDLSLNLQAIVAQQLIPTPDGKGYRAAIEVLLNSQLISDYIRKGELHEIKEVMTRSRDSGMQTFDQ
ALFDLYENGDITYQDAIKHADSPNDLRLKIKLNSKNGSKDIDENASGLSLNIG
Nucleotide
Download Length: 1122 bp
>NTDB_id=155008 AK825_RS01710 WP_068034204.1 397334..398455(-) (pilU) [Psychrobacter sp. P11G5]
ATGGACTTCGACAAACTACTACAACTCATGGTTAAAAAGAACGGCTCTGATCTATTTATCACAGCTGGCGTAGCCCCTTC
TATGAAAATAAATGGCACTATCTGCCCTGTGGGACAGGCGCCATTGACTGGTGAGCAAACGCTACTTTTGGTCAAAAGCC
TTATGACCTACAATCAGCAAAAAGAGTTTGAAGACACTAACGAATGTCAATTTGCCATCTCAGATAAATCGCAGCTAGCA
CGCTTTCGTGTTAGTGCTTTTATGCAGCGTGATATGGCAGGGATGGTTCTAAGAAAGATTGAAAATAAAATACCAACGGT
TGAAGAGCTGCGCTTGCCGCCCTCTCTAAAAGAGTTGGCAATGAGAAAGCGTGGTATTATTTTATTGGTAGGTGCAACAG
GTACTGGCAAATCGACAACGCTTGCTTCAATGATAGGTCATCGTAACCAAAACTCCCATGGTCATATTATTACCATCGAA
GATCCGATAGAGTTCGTACATGAGCACAAAGGCTGTATTATTACGCAACGTGAAGTTGGTGTCGATACTTTATCGTTTGA
AGCAGGTCTAAAAAACACTCTGCGCCAAGCCCCTGACGTTATTCTAATCGGCGAGATTCGTAACCGAGAAGTTATGGATT
ATGCTATTCAATATGCTGAAACAGGGCATTTAGTTTTTGCAACGTTACATGCAAATAATGCCAACCAAGCTATTGATCGC
ATCATTCATTTCTTTGAGGCTGATCGTCATAATCAGTTATTCATGGATTTATCACTTAACTTACAGGCCATTGTTGCTCA
ACAACTTATTCCAACCCCAGATGGTAAAGGCTACCGCGCCGCCATTGAAGTTCTACTGAACTCGCAGCTAATTAGTGACT
ATATCCGTAAGGGTGAGCTACATGAAATTAAAGAAGTCATGACGCGCTCACGTGATAGTGGTATGCAAACATTTGATCAA
GCGCTGTTTGATCTGTACGAAAATGGTGATATTACCTACCAAGATGCGATTAAACACGCTGACTCACCGAATGACTTACG
CCTAAAAATCAAATTAAATAGTAAAAACGGTAGTAAAGATATTGATGAAAATGCTAGTGGTTTGTCTTTAAATATTGGCT
AG
ATGGACTTCGACAAACTACTACAACTCATGGTTAAAAAGAACGGCTCTGATCTATTTATCACAGCTGGCGTAGCCCCTTC
TATGAAAATAAATGGCACTATCTGCCCTGTGGGACAGGCGCCATTGACTGGTGAGCAAACGCTACTTTTGGTCAAAAGCC
TTATGACCTACAATCAGCAAAAAGAGTTTGAAGACACTAACGAATGTCAATTTGCCATCTCAGATAAATCGCAGCTAGCA
CGCTTTCGTGTTAGTGCTTTTATGCAGCGTGATATGGCAGGGATGGTTCTAAGAAAGATTGAAAATAAAATACCAACGGT
TGAAGAGCTGCGCTTGCCGCCCTCTCTAAAAGAGTTGGCAATGAGAAAGCGTGGTATTATTTTATTGGTAGGTGCAACAG
GTACTGGCAAATCGACAACGCTTGCTTCAATGATAGGTCATCGTAACCAAAACTCCCATGGTCATATTATTACCATCGAA
GATCCGATAGAGTTCGTACATGAGCACAAAGGCTGTATTATTACGCAACGTGAAGTTGGTGTCGATACTTTATCGTTTGA
AGCAGGTCTAAAAAACACTCTGCGCCAAGCCCCTGACGTTATTCTAATCGGCGAGATTCGTAACCGAGAAGTTATGGATT
ATGCTATTCAATATGCTGAAACAGGGCATTTAGTTTTTGCAACGTTACATGCAAATAATGCCAACCAAGCTATTGATCGC
ATCATTCATTTCTTTGAGGCTGATCGTCATAATCAGTTATTCATGGATTTATCACTTAACTTACAGGCCATTGTTGCTCA
ACAACTTATTCCAACCCCAGATGGTAAAGGCTACCGCGCCGCCATTGAAGTTCTACTGAACTCGCAGCTAATTAGTGACT
ATATCCGTAAGGGTGAGCTACATGAAATTAAAGAAGTCATGACGCGCTCACGTGATAGTGGTATGCAAACATTTGATCAA
GCGCTGTTTGATCTGTACGAAAATGGTGATATTACCTACCAAGATGCGATTAAACACGCTGACTCACCGAATGACTTACG
CCTAAAAATCAAATTAAATAGTAAAAACGGTAGTAAAGATATTGATGAAAATGCTAGTGGTTTGTCTTTAAATATTGGCT
AG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Acinetobacter baylyi ADP1 |
68.785 |
97.051 |
0.668 |
| pilU | Pseudomonas stutzeri DSM 10701 |
65.591 |
99.732 |
0.654 |
| pilU | Vibrio cholerae strain A1552 |
53.495 |
99.732 |
0.534 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.966 |
93.298 |
0.41 |
| pilT | Legionella pneumophila strain ERS1305867 |
41.964 |
90.08 |
0.378 |
| pilT | Legionella pneumophila strain Lp02 |
41.964 |
90.08 |
0.378 |
| pilT | Acinetobacter nosocomialis M2 |
39.65 |
91.957 |
0.365 |
| pilT | Acinetobacter baumannii D1279779 |
39.65 |
91.957 |
0.365 |
| pilT | Acinetobacter baumannii strain A118 |
39.65 |
91.957 |
0.365 |
| pilT | Pseudomonas aeruginosa PAK |
39.306 |
92.761 |
0.365 |