Detailed information
Bioinformatically predicted
Overview
| Name | comP | Type | Machinery gene |
| Locus tag | AC028_RS01880 | Genome accession | NZ_CP012002 |
| Coordinates | 417520..417948 (-) | Length | 142 a.a. |
| NCBI ID | WP_007962467.1 | Uniprot ID | - |
| Organism | Xanthomonas citri pv. aurantifolii strain 1566 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 412520..422948
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AC028_RS01860 (AC028_01730) | pilR | 413328..414782 (+) | 1455 | WP_173647341.1 | sigma-54 dependent transcriptional regulator | Regulator |
| AC028_RS01870 (AC028_01735) | pilB | 415231..416967 (-) | 1737 | WP_007965359.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AC028_RS01875 (AC028_01740) | pilA2 | 417009..417422 (-) | 414 | WP_088411725.1 | pilin | Machinery gene |
| AC028_RS01880 (AC028_01745) | comP | 417520..417948 (-) | 429 | WP_007962467.1 | pilin | Machinery gene |
| AC028_RS01885 (AC028_01750) | pilC | 418294..419553 (+) | 1260 | WP_007962468.1 | type II secretion system F family protein | Machinery gene |
| AC028_RS01890 (AC028_01755) | - | 419560..420423 (+) | 864 | WP_007962469.1 | A24 family peptidase | - |
| AC028_RS01895 (AC028_01760) | coaE | 420437..421048 (+) | 612 | WP_007962470.1 | dephospho-CoA kinase | - |
| AC028_RS01900 (AC028_01765) | - | 421163..422143 (-) | 981 | WP_007969100.1 | IS5 family transposase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 14527.67 Da Isoelectric Point: 8.4798
>NTDB_id=150034 AC028_RS01880 WP_007962467.1 417520..417948(-) (comP) [Xanthomonas citri pv. aurantifolii strain 1566]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGAANSAVGTTWTCTGSGSQSKYYPAECRR
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSELAVMASSFKTTVAENIANNGGTLPADACVGVGATAATTN
MASIACTPATGNIVVTGDATRTKGTVLTYAPTVGAANSAVGTTWTCTGSGSQSKYYPAECRR
Nucleotide
Download Length: 429 bp
>NTDB_id=150034 AC028_RS01880 WP_007962467.1 417520..417948(-) (comP) [Xanthomonas citri pv. aurantifolii strain 1566]
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCTGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGTTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGCACCGTTTT
GACCTATGCTCCCACAGTGGGCGCTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACTGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA
ATGAAGAAGCAACAAGGCTTTACCCTGATCGAATTGATGATCGTTGTTGCGATCATCGCAATCCTGGCTGCCATTGCTCT
TCCGGCTTATCAGGACTACACCATTCGTTCGCGTGTTTCGGAACTGGCCGTGATGGCTAGCTCCTTTAAGACGACCGTTG
CGGAAAACATCGCCAACAACGGCGGCACCCTGCCAGCTGACGCTTGCGTCGGCGTTGGTGCTACCGCTGCGACCACTAAT
ATGGCTTCCATCGCTTGCACTCCCGCGACTGGCAACATCGTCGTAACCGGCGATGCAACTCGGACCAAGGGCACCGTTTT
GACCTATGCTCCCACAGTGGGCGCTGCTAACTCGGCGGTTGGTACCACTTGGACCTGCACTGGCAGTGGTAGCCAGTCCA
AGTACTATCCGGCCGAGTGCCGCCGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comP | Acinetobacter baylyi ADP1 |
54.305 |
100 |
0.577 |
| pilA2 | Legionella pneumophila str. Paris |
55.319 |
99.296 |
0.549 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
54.61 |
99.296 |
0.542 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
41.566 |
100 |
0.486 |
| pilA | Pseudomonas aeruginosa PAK |
37.58 |
100 |
0.415 |
| pilA/pilA1 | Eikenella corrodens VA1 |
39.073 |
100 |
0.415 |
| pilE | Neisseria gonorrhoeae strain FA1090 |
34.94 |
100 |
0.408 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.86 |
100 |
0.401 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.583 |
100 |
0.401 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.636 |
90.845 |
0.387 |
| pilA | Haemophilus influenzae 86-028NP |
38.971 |
95.775 |
0.373 |