Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AC028_RS01860 Genome accession   NZ_CP012002
Coordinates   413328..414782 (+) Length   484 a.a.
NCBI ID   WP_173647341.1    Uniprot ID   -
Organism   Xanthomonas citri pv. aurantifolii strain 1566     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 408328..419782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC028_RS01835 (AC028_01710) - 408366..408737 (-) 372 WP_042675483.1 endonuclease domain-containing protein -
  AC028_RS01845 (AC028_01715) sucD 409144..410019 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  AC028_RS01850 (AC028_01720) sucC 410044..411213 (-) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  AC028_RS01855 (AC028_01725) - 411445..413058 (+) 1614 WP_007965357.1 HAMP domain-containing sensor histidine kinase -
  AC028_RS01860 (AC028_01730) pilR 413328..414782 (+) 1455 WP_173647341.1 sigma-54 dependent transcriptional regulator Regulator
  AC028_RS01870 (AC028_01735) pilB 415231..416967 (-) 1737 WP_007965359.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AC028_RS01875 (AC028_01740) pilA2 417009..417422 (-) 414 WP_088411725.1 pilin Machinery gene
  AC028_RS01880 (AC028_01745) comP 417520..417948 (-) 429 WP_007962467.1 pilin Machinery gene
  AC028_RS01885 (AC028_01750) pilC 418294..419553 (+) 1260 WP_007962468.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52484.27 Da        Isoelectric Point: 7.0128

>NTDB_id=150031 AC028_RS01860 WP_173647341.1 413328..414782(+) (pilR) [Xanthomonas citri pv. aurantifolii strain 1566]
MGRHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATISKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAAPPGGAAAEPRDAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=150031 AC028_RS01860 WP_173647341.1 413328..414782(+) (pilR) [Xanthomonas citri pv. aurantifolii strain 1566]
TTGGGCCGCCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCCTGCGCATCAGCACTG
CTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGACCGACATGCGTTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCAGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGCACGTGCCGCCGGCCCGTTCG
TACCGGTCAACTGTGGTGCCATTCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCCCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTACGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCACGCCTGGCGCACAGCCACGGCCGCCCCATTCCACTGCTGACCCAATCCGCACTCGACGCATTGAATCACTACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCTACC
GACCTGCGCCTGCCCGCGCACGGCGGCCACCGTTTGGCCGCCCCCCCAGGAGGCGCCGCGGCCGAACCGCGCGACGCCGT
GGTCGACATCGACCCCGCCTCGGCCGCGCTGCCGTCCTACATCGAGCAACTGGAACGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGCTGCGTTACAAGCTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(28-134)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment