Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   A1D13_RS08945 Genome accession   NZ_CP014759
Coordinates   1957554..1958858 (-) Length   434 a.a.
NCBI ID   WP_014844139.1    Uniprot ID   -
Organism   Legionella pneumophila strain F4468     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1952554..1963858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D13_RS08925 (A1D13_08745) fliF 1952751..1954385 (-) 1635 WP_014844135.1 flagellar basal-body MS-ring/collar protein FliF -
  A1D13_RS08930 (A1D13_08750) fliE 1954558..1954872 (-) 315 WP_014844136.1 flagellar hook-basal body complex protein FliE -
  A1D13_RS08935 (A1D13_08755) fleR 1954887..1956200 (-) 1314 WP_014844137.1 sigma-54-dependent response regulator transcription factor FleR -
  A1D13_RS08940 (A1D13_08760) - 1956224..1957255 (-) 1032 WP_027219796.1 sensor histidine kinase -
  A1D13_RS08945 (A1D13_08765) rarA 1957554..1958858 (-) 1305 WP_014844139.1 replication-associated recombination protein A Machinery gene
  A1D13_RS08950 (A1D13_08770) lolA 1958874..1959482 (-) 609 WP_014844140.1 outer membrane lipoprotein chaperone LolA -
  A1D13_RS08955 (A1D13_08775) - 1959485..1961869 (-) 2385 WP_027219795.1 DNA translocase FtsK -
  A1D13_RS08960 (A1D13_08780) trxB 1961942..1962892 (+) 951 WP_014844142.1 thioredoxin-disulfide reductase -
  A1D13_RS08965 (A1D13_08785) aat 1962895..1963563 (+) 669 WP_027219794.1 leucyl/phenylalanyl-tRNA--protein transferase -

Sequence

Protein


Download         Length: 434 a.a.        Molecular weight: 48636.01 Da        Isoelectric Point: 7.0467

>NTDB_id=149352 A1D13_RS08945 WP_014844139.1 1957554..1958858(-) (rarA) [Legionella pneumophila strain F4468]
MSLFNKEPDPPLAESLRPQHINEVIGQSHLLGEGKPLRLCFMGSKLHSMILWGPPGVGKTTIARLTAQAFDCEWIALSAV
FSGVKDIRAAIEKAQEYLIHDKQTILFIDEIHRFNKAQQDALLPYTESGLITFIGATTENPSFEVNPALLSRAQVYVLKP
LSEQELKLLFLRAKQRALSSLQFTEEAMDFLISCADGDARRLLNLLEQTKTACLTIKTAVVDVELLHNVIVQSGRRFDKG
GEAFYDQISALHKSVRGSNPDAALYWLCRMLDGGVDPYYLARRIIRMSWEDIGLADPKAIQIANDAAATYERLGSPEGEL
ALAQAVIYLSVAAKSNAGYVAFNQAMEFIKRDKSREVPIHLRNAPTQLMKKLGYGHEYRYAHDEPHGYAAGECYLPEGMP
EVNWYNPVQRGLETKIAEKLAFLRQLDKDMKKKV

Nucleotide


Download         Length: 1305 bp        

>NTDB_id=149352 A1D13_RS08945 WP_014844139.1 1957554..1958858(-) (rarA) [Legionella pneumophila strain F4468]
ATGAGCCTATTCAATAAAGAACCTGATCCACCATTGGCTGAAAGTTTAAGGCCTCAGCATATCAATGAGGTCATAGGTCA
AAGTCATTTGCTTGGAGAGGGTAAACCCCTAAGACTTTGTTTTATGGGCTCCAAATTGCATTCTATGATCTTATGGGGGC
CACCAGGGGTCGGTAAGACTACTATAGCAAGATTAACCGCACAGGCTTTTGATTGTGAATGGATAGCATTATCAGCTGTG
TTTTCGGGTGTTAAGGATATTCGAGCTGCGATTGAGAAAGCGCAGGAATATTTAATTCATGATAAACAGACTATCTTGTT
TATTGATGAAATTCATAGATTTAATAAAGCTCAGCAAGATGCCTTATTACCTTATACAGAATCAGGTTTAATTACTTTCA
TTGGGGCAACTACAGAAAATCCCTCTTTTGAGGTTAATCCAGCGTTATTATCACGGGCGCAAGTTTATGTTTTAAAACCG
TTATCGGAGCAGGAGTTAAAACTCTTATTTCTTAGGGCTAAGCAAAGAGCGTTATCTTCTCTGCAATTTACCGAGGAAGC
CATGGATTTTTTAATTTCTTGTGCTGATGGAGATGCCAGACGATTACTCAATTTACTTGAGCAAACAAAAACAGCCTGCC
TAACAATTAAAACAGCAGTTGTTGATGTAGAGCTTTTACATAATGTGATAGTACAAAGTGGTCGACGTTTTGATAAAGGT
GGAGAAGCGTTTTACGATCAGATTTCTGCTTTACATAAGTCGGTACGAGGCTCTAATCCTGATGCGGCATTATATTGGCT
ATGTCGAATGCTGGATGGTGGTGTGGATCCATATTATTTAGCCAGACGTATTATTAGAATGTCATGGGAAGACATTGGGT
TAGCAGATCCGAAAGCAATTCAAATCGCTAATGATGCTGCTGCAACTTATGAGAGGCTTGGCTCACCCGAGGGCGAGCTT
GCTTTGGCACAAGCTGTAATTTATTTGTCTGTTGCTGCCAAGAGCAATGCGGGATATGTCGCATTTAATCAAGCCATGGA
ATTTATAAAAAGAGACAAGTCGAGAGAAGTACCCATTCACTTGAGAAACGCTCCCACTCAATTAATGAAAAAACTAGGTT
ATGGTCATGAATATCGATATGCTCATGATGAACCACACGGCTATGCGGCTGGTGAATGTTATTTACCTGAAGGAATGCCA
GAAGTAAATTGGTATAACCCGGTACAAAGAGGTTTAGAAACTAAAATTGCAGAAAAGCTCGCTTTTCTGCGCCAATTAGA
TAAAGATATGAAAAAGAAAGTTTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(49-158)

AAA C-terminal domain (AAA_assoc_2)

(180-256)

MgsA AAA+ ATPase C terminal (MgsA_C)

(257-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

37.558

100

0.376

Multiple sequence alignment