Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   AU077_RS08495 Genome accession   NZ_CP013688
Coordinates   1699843..1700328 (-) Length   161 a.a.
NCBI ID   WP_082306748.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1694843..1705328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS08470 (AU077_08470) - 1695825..1696406 (-) 582 WP_014293914.1 glycoside hydrolase family 73 protein -
  AU077_RS08475 (AU077_08475) - 1696403..1697176 (-) 774 WP_058621909.1 M15 family metallopeptidase -
  AU077_RS08480 (AU077_08480) - 1697160..1697864 (-) 705 WP_014293912.1 histidine phosphatase family protein -
  AU077_RS08485 (AU077_08485) - 1698089..1699426 (-) 1338 WP_058621910.1 PFL family protein -
  AU077_RS08490 (AU077_08490) - 1699438..1699704 (-) 267 WP_009853366.1 ACT domain-containing protein -
  AU077_RS08495 (AU077_08495) comX/sigX 1699843..1700328 (-) 486 WP_082306748.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19369.46 Da        Isoelectric Point: 8.6128

>NTDB_id=141978 AU077_RS08495 WP_082306748.1 1699843..1700328(-) (comX/sigX) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFCLLQEKPNLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KCKFNQLPYEEISDVGHCLAQTRFLDLADYVAYKERLQAVEQRLGAGAKEKLAKVMRGERFEGKKAFLTKIEPFFNEFRE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=141978 AU077_RS08495 WP_082306748.1 1699843..1700328(-) (comX/sigX) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGATGGAAACATTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCTGTCTCCTGCAAGAAAAGCCTAATTTGTTGCAGG
ACGACTTGTCTCTTTATGCCTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAATGTAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAACAAGATTTCTGGATCT
GGCGGATTATGTGGCTTATAAGGAGCGGCTGCAGGCGGTTGAGCAGCGATTAGGAGCGGGAGCAAAAGAAAAACTAGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGGAAAAAGGCCTTCTTGACTAAAATTGAGCCCTTCTTTAATGAGTTTAGGGAA
AAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.