Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   AB406_RS09360 Genome accession   NZ_CP011859
Coordinates   1922338..1922664 (+) Length   108 a.a.
NCBI ID   WP_079207989.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain HXb2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1917338..1927664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB406_RS09325 (AB406_1867) - 1917409..1918071 (-) 663 WP_079207981.1 3-oxoacid CoA-transferase subunit B -
  AB406_RS09330 (AB406_1868) - 1918080..1918787 (-) 708 WP_079207983.1 CoA transferase subunit A -
  AB406_RS09335 (AB406_1869) - 1918803..1919078 (-) 276 WP_079207985.1 hypothetical protein -
  AB406_RS09340 (AB406_1870) - 1919108..1920289 (-) 1182 WP_079207988.1 acyl-CoA dehydrogenase family protein -
  AB406_RS09345 (AB406_1871) - 1920365..1920568 (+) 204 WP_014938619.1 putative signal transducing protein -
  AB406_RS09350 (AB406_1872) - 1920581..1921657 (+) 1077 WP_064970707.1 tyrosine-type recombinase/integrase -
  AB406_RS09355 (AB406_1873) - 1921661..1922008 (-) 348 WP_064970705.1 hypothetical protein -
  AB406_RS09360 (AB406_1874) ssbB/cilA 1922338..1922664 (+) 327 WP_079207989.1 single-stranded DNA-binding protein Machinery gene
  AB406_RS09365 (AB406_1875) gyrB 1922742..1924676 (-) 1935 WP_004918853.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AB406_RS09370 (AB406_1876) - 1924802..1925116 (-) 315 WP_014938624.1 DUF4286 family protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12214.96 Da        Isoelectric Point: 9.2704

>NTDB_id=129527 AB406_RS09360 WP_079207989.1 1922338..1922664(+) (ssbB/cilA) [Riemerella anatipestifer strain HXb2]
MKNKVQLIGNVGNTPEIKEVNNTKVAHLSIATNEIYKNAQGERVEQTEWHKVVAWGGLAEIIEKYVTKGKEIAVEGKLTY
RSYDDKEGNKRYITEIVANDILLLGRTK

Nucleotide


Download         Length: 327 bp        

>NTDB_id=129527 AB406_RS09360 WP_079207989.1 1922338..1922664(+) (ssbB/cilA) [Riemerella anatipestifer strain HXb2]
ATGAAAAACAAGGTTCAACTTATTGGTAATGTGGGTAACACGCCAGAAATTAAAGAGGTTAATAATACTAAAGTAGCTCA
TCTTTCTATAGCTACTAACGAAATTTACAAAAATGCACAAGGAGAAAGAGTAGAGCAGACGGAATGGCATAAGGTGGTGG
CTTGGGGAGGACTAGCAGAAATTATAGAAAAGTATGTTACTAAAGGTAAAGAGATAGCTGTTGAGGGTAAATTAACCTAC
CGAAGTTATGATGATAAAGAAGGAAATAAACGCTACATTACCGAAATTGTAGCTAATGATATCCTGCTTTTGGGGAGGAC
TAAATAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.857

97.222

0.417
  ssb Glaesserella parasuis strain SC1401

42.308

96.296

0.407
  ssbB/cilA Streptococcus mitis NCTC 12261

41.905

97.222

0.407
  ssbB/cilA Streptococcus pneumoniae R6

41.905

97.222

0.407
  ssbB/cilA Streptococcus mitis SK321

41.905

97.222

0.407
  ssbB/cilA Streptococcus pneumoniae Rx1

41.905

97.222

0.407
  ssbB/cilA Streptococcus pneumoniae D39

41.905

97.222

0.407
  ssb Vibrio cholerae strain A1552

44.33

89.815

0.398
  ssb Neisseria gonorrhoeae MS11

41.346

96.296

0.398
  ssb Neisseria meningitidis MC58

41.346

96.296

0.398
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40

97.222

0.389
  ssbB Lactococcus lactis subsp. cremoris KW2

41.667

88.889

0.37
  ssbA Streptococcus mutans UA159

38.095

97.222

0.37