Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACOQN4_RS08285 Genome accession   NZ_OZ244735
Coordinates   1613990..1615234 (-) Length   414 a.a.
NCBI ID   WP_153714433.1    Uniprot ID   A0A5Q2QGH3
Organism   MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1608990..1620234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOQN4_RS08260 argJ 1610737..1611909 (+) 1173 WP_420550362.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACOQN4_RS08265 mutT 1611890..1612312 (+) 423 WP_153714437.1 8-oxo-dGTP diphosphatase MutT -
  ACOQN4_RS08270 - 1612276..1612485 (-) 210 WP_420550363.1 DNA gyrase inhibitor YacG -
  ACOQN4_RS08275 coaE 1612482..1613081 (-) 600 WP_153714435.1 dephospho-CoA kinase -
  ACOQN4_RS08280 pilD 1613078..1613965 (-) 888 WP_420550364.1 prepilin peptidase Machinery gene
  ACOQN4_RS08285 pilC 1613990..1615234 (-) 1245 WP_153714433.1 type II secretion system F family protein Machinery gene
  ACOQN4_RS08290 pilB 1615247..1616944 (-) 1698 WP_420550365.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACOQN4_RS08295 pilA2 1617149..1617547 (+) 399 WP_153714431.1 pilin Machinery gene
  ACOQN4_RS08300 pilA 1617767..1618231 (+) 465 WP_153714430.1 pilin Machinery gene
  ACOQN4_RS08305 - 1618285..1619232 (-) 948 WP_153714429.1 diguanylate cyclase domain-containing protein -
  ACOQN4_RS08310 - 1619317..1620093 (-) 777 WP_153714428.1 YdcF family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44829.41 Da        Isoelectric Point: 9.4911

>NTDB_id=1171113 ACOQN4_RS08285 WP_153714433.1 1613990..1615234(-) (pilC) [MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8]
MATATATARTEIRKDKDLYVWNGVDKRGRKVNGEITGANVALVRAQLRRQGIVPDKVRKKPKPLFGERKAAIKPGDVAIF
TRQLATMMKAGVPLVQAFEIVADGLDNATLKKLIGDIKLDVEGGTSFANALKRHPKHFDDLFTSLVDAGEQAGALETMLD
RLATYKEKTEALKAKIKKAMTYPIAVLVVAFVVTVILLVKVVPQFESMFTSFGGELPAFTQVVVAMSEWAQQYWFIGIGV
IAAAVFGFSTAVKRSDKFATRVDAFLLKAPIVGDIVTQSAIARYCRTLSTTFAAGVPLVEALDSAAGAAGNRIYYAAIKI
IRDDVETGQQLQFSMRAAGIFPNMVIQMVSIGEESGALDEMLHKAANHYEDAVDNSVDNLTALMEPMIMSFLGVVIGGLV
VAMYLPIFQMGSVV

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=1171113 ACOQN4_RS08285 WP_153714433.1 1613990..1615234(-) (pilC) [MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8]
ATGGCCACAGCCACTGCAACCGCCCGCACCGAGATCCGCAAGGACAAAGACCTGTACGTTTGGAACGGGGTCGATAAACG
CGGCCGCAAGGTCAACGGCGAAATTACCGGCGCCAACGTCGCCCTGGTGCGCGCCCAATTGCGCCGCCAGGGGATCGTCC
CGGACAAGGTCCGCAAAAAGCCCAAGCCGCTGTTTGGCGAACGCAAGGCGGCGATCAAGCCGGGTGACGTCGCCATATTT
ACGCGCCAGTTGGCGACCATGATGAAGGCCGGCGTGCCGCTGGTTCAGGCCTTTGAAATTGTTGCCGACGGCTTGGACAA
TGCGACCCTGAAAAAACTGATCGGAGACATCAAACTGGATGTCGAGGGCGGGACCTCCTTTGCCAACGCGCTGAAACGTC
ACCCCAAACATTTTGACGACCTGTTCACCTCACTGGTTGATGCCGGCGAACAGGCCGGCGCGTTAGAAACCATGTTGGAC
CGGCTGGCGACCTACAAGGAAAAAACCGAGGCGCTCAAGGCCAAGATCAAAAAAGCCATGACCTACCCGATCGCGGTCTT
GGTGGTGGCGTTTGTGGTCACGGTGATTTTGTTGGTTAAGGTGGTGCCGCAGTTCGAATCGATGTTCACCTCGTTTGGCG
GCGAATTGCCCGCGTTCACCCAAGTGGTGGTGGCGATGTCGGAGTGGGCCCAGCAGTACTGGTTTATCGGCATCGGAGTC
ATTGCCGCGGCCGTGTTTGGGTTTTCTACGGCGGTTAAACGAAGCGACAAATTCGCCACCCGCGTGGATGCATTTTTGCT
CAAGGCGCCGATTGTCGGTGACATCGTGACCCAGTCCGCGATTGCCCGGTATTGCCGCACCCTATCGACCACCTTTGCCG
CCGGTGTGCCGCTGGTTGAAGCCTTGGACAGCGCCGCTGGAGCCGCCGGCAATCGTATTTACTACGCCGCGATCAAGATC
ATCCGAGACGACGTCGAAACCGGCCAACAACTTCAATTCAGCATGCGTGCGGCCGGCATCTTTCCCAACATGGTCATTCA
AATGGTCTCAATTGGCGAAGAATCCGGCGCCCTCGACGAAATGCTGCACAAGGCGGCCAATCACTATGAAGACGCGGTCG
ACAATTCGGTGGATAACCTGACCGCGTTGATGGAGCCGATGATTATGTCGTTCCTGGGGGTAGTCATTGGGGGATTGGTG
GTGGCAATGTACCTGCCGATATTCCAAATGGGGTCGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(80-203)

Type II secretion system (T2SS), protein F (T2SSF)

(285-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5Q2QGH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

60.553

96.135

0.582
  pilC Pseudomonas stutzeri DSM 10701

60.202

95.894

0.577
  pilC Acinetobacter baumannii D1279779

60.202

95.894

0.577
  pilC Legionella pneumophila strain ERS1305867

55.051

95.652

0.527
  pilG Neisseria gonorrhoeae MS11

46.269

97.101

0.449
  pilG Neisseria meningitidis 44/76-A

46.02

97.101

0.447
  pilC Vibrio cholerae strain A1552

43.939

95.652

0.42
  pilC Vibrio campbellii strain DS40M4

42.569

95.894

0.408

Multiple sequence alignment