Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACOQN4_RS08280 Genome accession   NZ_OZ244735
Coordinates   1613078..1613965 (-) Length   295 a.a.
NCBI ID   WP_420550364.1    Uniprot ID   -
Organism   MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1608078..1618965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOQN4_RS08260 argJ 1610737..1611909 (+) 1173 WP_420550362.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  ACOQN4_RS08265 mutT 1611890..1612312 (+) 423 WP_153714437.1 8-oxo-dGTP diphosphatase MutT -
  ACOQN4_RS08270 - 1612276..1612485 (-) 210 WP_420550363.1 DNA gyrase inhibitor YacG -
  ACOQN4_RS08275 coaE 1612482..1613081 (-) 600 WP_153714435.1 dephospho-CoA kinase -
  ACOQN4_RS08280 pilD 1613078..1613965 (-) 888 WP_420550364.1 prepilin peptidase Machinery gene
  ACOQN4_RS08285 pilC 1613990..1615234 (-) 1245 WP_153714433.1 type II secretion system F family protein Machinery gene
  ACOQN4_RS08290 pilB 1615247..1616944 (-) 1698 WP_420550365.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACOQN4_RS08295 pilA2 1617149..1617547 (+) 399 WP_153714431.1 pilin Machinery gene
  ACOQN4_RS08300 pilA 1617767..1618231 (+) 465 WP_153714430.1 pilin Machinery gene

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 31481.40 Da        Isoelectric Point: 6.8365

>NTDB_id=1171112 ACOQN4_RS08280 WP_420550364.1 1613078..1613965(-) (pilD) [MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8]
MIQTLADAGLFLPLVTVLGLLIGSFLNVVVHRLPIMMENELRLDCEWLSAKDNGLPEPDPTAPTGPIFNLSKPRSRCPQC
DTQIRARDNIPVLSWVLLKGRCRDCDHPISARYPIVEASTAALSLLVAWVMGPSLATIAALALVWTLWALTLIDADTQLL
PDQLTLPLTWAGLLVATTGVWPVSLTDALFGAVFGYLSLWSVFHLFRILTGKHGMGAGDFKLLAALGAWMGWQVLPLIIV
LSSLVGAVVGISAIALAKMGARAPMAFGPYLAGAGLIALLWGAQLIDGYKAVAGL

Nucleotide


Download         Length: 888 bp        

>NTDB_id=1171112 ACOQN4_RS08280 WP_420550364.1 1613078..1613965(-) (pilD) [MAG: Litorivicinus lipolyticus isolate cfb32c0c-0c5a-4fc9-8b22-2b72eeb7acf8]
TTGATTCAAACATTGGCCGATGCTGGCCTCTTTTTACCCCTGGTCACCGTATTGGGCCTATTAATCGGCAGCTTTCTGAA
TGTCGTCGTGCATCGACTGCCGATCATGATGGAAAACGAGTTGCGGCTGGACTGTGAGTGGCTCAGCGCAAAAGATAACG
GCCTGCCCGAACCGGACCCGACCGCGCCCACCGGTCCGATCTTTAACCTATCGAAGCCGCGCTCGCGCTGCCCACAATGC
GACACTCAAATTCGCGCGCGCGATAACATCCCGGTGTTGTCGTGGGTGCTATTAAAAGGCCGTTGCCGGGACTGCGATCA
TCCGATCAGTGCGCGCTACCCGATCGTCGAAGCCAGCACCGCAGCGCTGTCGCTGCTGGTGGCCTGGGTGATGGGGCCCA
GCCTTGCCACCATCGCCGCACTGGCACTGGTATGGACGCTGTGGGCACTGACGCTGATTGATGCGGACACCCAATTGCTA
CCCGATCAATTAACCTTACCGCTGACCTGGGCGGGATTACTGGTCGCCACCACCGGGGTGTGGCCGGTCAGCCTGACCGA
CGCCCTGTTTGGCGCGGTCTTTGGGTACCTCAGTCTGTGGTCCGTGTTTCATTTATTTCGCATCCTAACTGGCAAGCACG
GCATGGGCGCGGGTGACTTCAAGCTGTTGGCCGCACTTGGCGCCTGGATGGGCTGGCAGGTGCTGCCGCTGATCATTGTG
CTGTCCAGTTTGGTCGGCGCCGTAGTCGGCATTTCGGCGATTGCCTTGGCCAAAATGGGCGCGCGTGCGCCAATGGCGTT
TGGGCCCTACTTGGCCGGTGCGGGTTTGATCGCCCTGTTGTGGGGCGCACAGTTAATTGACGGTTATAAGGCGGTGGCAG
GCTTATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-130)

Type IV leader peptidase family (Peptidase_A24)

(142-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

53.571

94.915

0.508
  pilD Vibrio campbellii strain DS40M4

52.857

94.915

0.502
  pilD Acinetobacter baumannii D1279779

48.364

93.22

0.451
  pilD Acinetobacter nosocomialis M2

48.364

93.22

0.451
  pilD Neisseria gonorrhoeae MS11

47.744

90.169

0.431

Multiple sequence alignment