Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACFEL6_RS16425 | Genome accession | NZ_OZ183475 |
| Coordinates | 2155390..2155836 (+) | Length | 148 a.a. |
| NCBI ID | WP_375321213.1 | Uniprot ID | - |
| Organism | Aliivibrio logei isolate 622f83115ee5131b54a8b4d1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2150390..2160836
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACFEL6_RS16410 | pdhR | 2152427..2153197 (-) | 771 | WP_105055485.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| ACFEL6_RS16415 | ampD | 2153486..2154037 (-) | 552 | WP_375322823.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| ACFEL6_RS16420 | nadC | 2154162..2155049 (+) | 888 | WP_375321212.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACFEL6_RS16425 | pilA | 2155390..2155836 (+) | 447 | WP_375321213.1 | pilin | Machinery gene |
| ACFEL6_RS16430 | pilB | 2155837..2157528 (+) | 1692 | WP_375321214.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACFEL6_RS16435 | pilC | 2157548..2158786 (+) | 1239 | WP_375321215.1 | type II secretion system F family protein | Machinery gene |
| ACFEL6_RS16440 | pilD | 2158891..2159778 (+) | 888 | WP_375321216.1 | prepilin peptidase | Machinery gene |
| ACFEL6_RS16445 | coaE | 2159775..2160398 (+) | 624 | WP_375321217.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15096.25 Da Isoelectric Point: 7.8474
>NTDB_id=1168048 ACFEL6_RS16425 WP_375321213.1 2155390..2155836(+) (pilA) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
MKQHQGQKGFTLIELMIVVAVIGVLSAIAMPQYQKYVAKAEVASALATLTGIKTNVEAYSVENGAFPASGTESDLGVPAS
IPGGAIAFSASSSAGSGTITYTFASAGVSTLLTNKKFQLARTGGDGSWKCDAPAGTPVTDDLLPKHCK
MKQHQGQKGFTLIELMIVVAVIGVLSAIAMPQYQKYVAKAEVASALATLTGIKTNVEAYSVENGAFPASGTESDLGVPAS
IPGGAIAFSASSSAGSGTITYTFASAGVSTLLTNKKFQLARTGGDGSWKCDAPAGTPVTDDLLPKHCK
Nucleotide
Download Length: 447 bp
>NTDB_id=1168048 ACFEL6_RS16425 WP_375321213.1 2155390..2155836(+) (pilA) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
ATGAAACAACATCAAGGACAGAAAGGCTTTACCTTAATTGAGTTAATGATTGTAGTTGCGGTGATTGGGGTGCTGTCGGC
TATAGCGATGCCTCAATATCAAAAATATGTGGCGAAAGCAGAGGTAGCTTCTGCATTAGCTACTTTAACTGGGATTAAAA
CTAATGTAGAAGCTTACTCAGTAGAAAATGGAGCTTTTCCTGCTAGTGGTACAGAGAGTGATTTAGGTGTCCCTGCATCT
ATCCCTGGTGGTGCAATTGCATTTTCAGCTTCAAGTTCTGCGGGTTCAGGTACAATCACTTATACCTTTGCCTCTGCTGG
TGTGAGTACTCTATTAACAAATAAAAAATTTCAACTAGCAAGAACTGGTGGAGATGGTTCTTGGAAGTGTGATGCTCCTG
CTGGAACTCCAGTAACAGATGATCTACTTCCAAAACACTGTAAATAA
ATGAAACAACATCAAGGACAGAAAGGCTTTACCTTAATTGAGTTAATGATTGTAGTTGCGGTGATTGGGGTGCTGTCGGC
TATAGCGATGCCTCAATATCAAAAATATGTGGCGAAAGCAGAGGTAGCTTCTGCATTAGCTACTTTAACTGGGATTAAAA
CTAATGTAGAAGCTTACTCAGTAGAAAATGGAGCTTTTCCTGCTAGTGGTACAGAGAGTGATTTAGGTGTCCCTGCATCT
ATCCCTGGTGGTGCAATTGCATTTTCAGCTTCAAGTTCTGCGGGTTCAGGTACAATCACTTATACCTTTGCCTCTGCTGG
TGTGAGTACTCTATTAACAAATAAAAAATTTCAACTAGCAAGAACTGGTGGAGATGGTTCTTGGAAGTGTGATGCTCCTG
CTGGAACTCCAGTAACAGATGATCTACTTCCAAAACACTGTAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
47.682 |
100 |
0.486 |
| pilA | Vibrio cholerae strain A1552 |
47.682 |
100 |
0.486 |
| pilA | Vibrio cholerae C6706 |
47.682 |
100 |
0.486 |
| pilA | Pseudomonas aeruginosa PAK |
43.709 |
100 |
0.446 |
| pilA | Acinetobacter baumannii strain A118 |
40.541 |
100 |
0.405 |
| pilA2 | Legionella pneumophila str. Paris |
39.437 |
95.946 |
0.378 |
| pilA | Acinetobacter nosocomialis M2 |
39.568 |
93.919 |
0.372 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
43.2 |
84.459 |
0.365 |