Detailed information NTG1168050

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ACFEL6_RS16435
• Genome accession: NZ_OZ183475
• Coordinates: 2157548..2158786 (+)
• Length: 412 a.a.
• NCBI ID: WP_375321215.1
• Uniprot ID: -
• Organism: Aliivibrio logei isolate 622f83115ee5131b54a8b4d1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2152548..2163786

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFEL6_RS16415	ampD	2153486..2154037 (-)	552	WP_375322823.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
ACFEL6_RS16420	nadC	2154162..2155049 (+)	888	WP_375321212.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACFEL6_RS16425	pilA	2155390..2155836 (+)	447	WP_375321213.1	pilin	Machinery gene
ACFEL6_RS16430	pilB	2155837..2157528 (+)	1692	WP_375321214.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACFEL6_RS16435	pilC	2157548..2158786 (+)	1239	WP_375321215.1	type II secretion system F family protein	Machinery gene
ACFEL6_RS16440	pilD	2158891..2159778 (+)	888	WP_375321216.1	prepilin peptidase	Machinery gene
ACFEL6_RS16445	coaE	2159775..2160398 (+)	624	WP_375321217.1	dephospho-CoA kinase	-
ACFEL6_RS16450	zapD	2160404..2161150 (+)	747	WP_105055492.1	cell division protein ZapD	-
ACFEL6_RS16455	yacG	2161158..2161379 (+)	222	WP_375321218.1	DNA gyrase inhibitor YacG	-
ACFEL6_RS16460	mutT	2161440..2161838 (-)	399	WP_375321219.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 412 a.a.
• Molecular weight: 46006.45 Da
• Isoelectric Point: 10.1207

>NTDB_id=1168050 ACFEL6_RS16435 WP_375321215.1 2157548..2158786(+) (pilC) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
MLKPKNKIKTLTLHNFQWRGINSTGKKVSGKILALTEVEVRAKLNEQSIQIKKIKKRSISSFEKMKHAVKRKDITLFTRQ
LATMLGAGVPIVQSLQLIAENNIKAEMKSILGQVCLSIEAGTQLSKALSTSCSLFDSFYIDLVATGEETGSLSHAFARLA
EYREKSEALRAKVVKAMIYPTMVFLIAIAVTVLMLMFVIPEFESIFKGFGADLPWFTQQVVNASHFLQNYGFWILFMLGL
ASLSLHLLKKKSYYFRFMLNRRSLQLPIIGAVLSKAAIAKFSRTLATSFSSGLPILHSLQTTSKTAGNLYYQEAILSVQQ
NTAAGMPLYLAMRHTQAFPEMVLQMVMIGEESGQLDDMLNKIAFVYEDEVDNTVDNLGKILEPFIILFLGVMISGLVVSM
YLPIFNLMNVIG

Nucleotide

• Length: 1239 bp

>NTDB_id=1168050 ACFEL6_RS16435 WP_375321215.1 2157548..2158786(+) (pilC) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
ATGCTAAAACCAAAAAACAAAATAAAAACGCTTACCCTGCATAACTTCCAATGGCGTGGCATTAATAGCACTGGTAAAAA
AGTATCAGGGAAAATCCTTGCACTTACCGAAGTAGAAGTTAGAGCAAAGCTCAACGAGCAAAGCATTCAAATAAAGAAAA
TTAAAAAGCGCAGCATTTCTAGTTTTGAAAAAATGAAACACGCCGTTAAACGAAAAGACATCACTCTTTTCACTCGTCAA
TTAGCCACAATGCTTGGTGCTGGTGTGCCCATAGTGCAATCATTACAGCTCATCGCAGAAAATAATATTAAAGCAGAAAT
GAAATCCATACTTGGTCAGGTCTGTTTATCAATAGAGGCTGGAACCCAACTTTCAAAAGCACTCTCTACCAGTTGCTCAC
TCTTTGATTCTTTTTATATTGATTTAGTGGCGACAGGTGAAGAAACAGGCAGTTTATCGCACGCATTTGCTCGTTTAGCT
GAATACAGAGAAAAAAGTGAGGCATTACGAGCAAAAGTCGTCAAAGCGATGATCTACCCTACAATGGTTTTTTTAATCGC
GATTGCGGTTACCGTTTTAATGCTTATGTTTGTTATCCCTGAATTTGAATCGATTTTTAAAGGGTTTGGGGCCGATCTTC
CTTGGTTTACCCAGCAAGTCGTCAATGCTTCCCATTTTTTACAAAATTATGGATTCTGGATTTTATTCATGTTGGGGCTT
GCTTCCCTATCGCTGCATTTATTAAAAAAGAAATCTTATTATTTTCGATTTATGCTCAACCGACGCAGTTTGCAACTGCC
AATTATTGGAGCGGTACTCTCCAAAGCAGCCATTGCAAAATTTAGTCGAACTCTCGCCACCAGTTTTAGCTCGGGGTTAC
CTATTTTACATAGCTTACAAACCACTAGTAAAACTGCAGGCAATCTTTACTACCAAGAAGCTATCTTATCCGTACAACAA
AACACTGCTGCAGGGATGCCTCTTTATTTAGCAATGCGACACACTCAAGCCTTTCCTGAGATGGTATTGCAAATGGTCAT
GATTGGTGAAGAATCAGGTCAATTGGATGACATGCTCAATAAAATTGCGTTCGTGTATGAAGACGAAGTTGATAATACCG
TCGATAATTTAGGGAAGATCCTTGAGCCCTTTATTATTCTATTTTTAGGAGTCATGATTAGTGGTCTTGTTGTCTCTATG
TACCTCCCTATTTTCAATTTAATGAATGTTATTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (77-200)

• Type II secretion system (T2SS), protein F (T2SSF) (281-403)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Vibrio cholerae strain A1552	63.861	98.058	0.626
pilC	Vibrio campbellii strain DS40M4	63.614	98.058	0.624
pilC	Acinetobacter baylyi ADP1	41.089	98.058	0.403
pilG	Neisseria meningitidis 44/76-A	41.457	96.602	0.4
pilC	Legionella pneumophila strain ERS1305867	40.695	97.816	0.398
pilG	Neisseria gonorrhoeae MS11	41.206	96.602	0.398
pilC	Acinetobacter baumannii D1279779	40.347	98.058	0.396
pilC	Pseudomonas stutzeri DSM 10701	40.152	96.117	0.386