Detailed information NTG1168051

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACFEL6_RS16440
• Genome accession: NZ_OZ183475
• Coordinates: 2158891..2159778 (+)
• Length: 295 a.a.
• NCBI ID: WP_375321216.1
• Uniprot ID: -
• Organism: Aliivibrio logei isolate 622f83115ee5131b54a8b4d1
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2153891..2164778

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACFEL6_RS16420	nadC	2154162..2155049 (+)	888	WP_375321212.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACFEL6_RS16425	pilA	2155390..2155836 (+)	447	WP_375321213.1	pilin	Machinery gene
ACFEL6_RS16430	pilB	2155837..2157528 (+)	1692	WP_375321214.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACFEL6_RS16435	pilC	2157548..2158786 (+)	1239	WP_375321215.1	type II secretion system F family protein	Machinery gene
ACFEL6_RS16440	pilD	2158891..2159778 (+)	888	WP_375321216.1	prepilin peptidase	Machinery gene
ACFEL6_RS16445	coaE	2159775..2160398 (+)	624	WP_375321217.1	dephospho-CoA kinase	-
ACFEL6_RS16450	zapD	2160404..2161150 (+)	747	WP_105055492.1	cell division protein ZapD	-
ACFEL6_RS16455	yacG	2161158..2161379 (+)	222	WP_375321218.1	DNA gyrase inhibitor YacG	-
ACFEL6_RS16460	mutT	2161440..2161838 (-)	399	WP_375321219.1	8-oxo-dGTP diphosphatase MutT	-
ACFEL6_RS16465	secA	2161925..2164648 (-)	2724	WP_375321220.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 33299.69 Da
• Isoelectric Point: 7.4690

>NTDB_id=1168051 ACFEL6_RS16440 WP_375321216.1 2158891..2159778(+) (pilD) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
MAVFDYYPWLFPLFATLFGLLVGSFLNVVIYRLPIMMEKEWKKECIDCFPDLQPQKKTSEQEETFNLSVPRSRCPKCNTQ
IKFYDNIPVISWLLLKGKCRQCSNPISFRYPAIELLSGAMCFAVSYFLPFSYFAIAAVLFTLVLIALTFIDIDTMLLPDQ
ITLPLLWTGIYLALVGWSSVSLIDSVMGAMAGYLILWSIYWGFKLITGKEGMGYGDFKLLAALGAWLGWQQLPLLVLLSS
VVGAIIGIAMLRAQKNGFDKAIPFGPYLAIAGWICLLWGHEISHWYFTSILGFPV

Nucleotide

• Length: 888 bp

>NTDB_id=1168051 ACFEL6_RS16440 WP_375321216.1 2158891..2159778(+) (pilD) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
ATGGCTGTTTTTGATTACTACCCTTGGCTTTTTCCACTCTTTGCAACTCTCTTTGGTTTACTTGTGGGTAGCTTTCTCAA
TGTTGTTATTTATCGCTTACCGATAATGATGGAAAAAGAATGGAAAAAAGAGTGCATCGATTGTTTTCCTGACTTACAGC
CTCAAAAAAAAACATCTGAACAAGAAGAAACATTCAATTTAAGTGTCCCTCGCTCTCGCTGCCCAAAATGTAATACACAA
ATTAAATTCTACGATAATATTCCTGTAATTAGCTGGTTATTACTAAAAGGAAAATGTCGTCAATGCAGTAATCCAATTAG
TTTTAGATATCCTGCAATTGAACTGTTATCTGGTGCTATGTGTTTCGCCGTATCTTATTTCTTGCCCTTCTCTTATTTTG
CAATTGCTGCCGTTCTATTTACCCTCGTACTCATTGCTCTCACCTTTATTGATATAGATACAATGTTACTGCCCGATCAA
ATAACCTTGCCACTATTATGGACAGGAATATATCTCGCTTTAGTTGGTTGGAGCTCAGTCTCTTTAATTGATTCTGTTAT
GGGGGCAATGGCAGGCTATCTTATCTTATGGTCCATCTACTGGGGCTTTAAACTTATAACAGGTAAAGAAGGCATGGGGT
ATGGTGACTTCAAATTATTAGCCGCTCTTGGGGCTTGGCTTGGCTGGCAACAATTACCTTTACTTGTTCTACTCTCTTCT
GTTGTCGGTGCTATTATTGGTATAGCAATGCTCCGAGCTCAAAAAAATGGCTTTGATAAAGCCATTCCATTTGGTCCATA
TCTCGCCATTGCCGGTTGGATATGTCTGTTATGGGGACATGAAATCAGCCATTGGTACTTTACTTCAATATTAGGATTTC
CAGTATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	67.466	98.983	0.668
pilD	Vibrio cholerae strain A1552	63.729	100	0.637
pilD	Acinetobacter nosocomialis M2	50.181	93.898	0.471
pilD	Acinetobacter baumannii D1279779	50.181	93.898	0.471
pilD	Neisseria gonorrhoeae MS11	48.148	91.525	0.441