Detailed information NTG1154352

Bioinformatically predicted

Overview

• Name: comX/comX2
• Type: Regulator
• Locus tag: AD178_RS09740
• Genome accession: NZ_OX244288
• Coordinates: 1886167..1886646 (-)
• Length: 159 a.a.
• NCBI ID: WP_000588863.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain PT8105 isolate 2RLC4
• Function: activate transcription of late competence genes (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1884991..1885944	1886167..1886646	flank	223

Gene organization within MGE regions

Location: 1884991..1886646

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AD178_RS09730 (SAMEA1463109_01965)	-	1884991..1885944 (+)	954	WP_001155341.1	IS30-like element ISSpn8 family transposase	-
AD178_RS09740 (SAMEA1463109_01967)	comX/comX2	1886167..1886646 (-)	480	WP_000588863.1	sigma-70 family RNA polymerase sigma factor	Regulator

Sequence

Protein

• Length: 159 a.a.
• Molecular weight: 19857.52 Da
• Isoelectric Point: 7.3797

>NTDB_id=1154352 AD178_RS09740 WP_000588863.1 1886167..1886646(-) (comX/comX2) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
MIKELYEEVQGTVYKCRNEYYLHLWELSDWDQEGMLCLHELISREEGLADDIPRLRKYFKTKFRNRILDYIRKQESQKRR
YDKEPYEEVGEISHRISEGGLWLDDYYLFHETLRDYRNKQSKEKQEELERVLSNERFRGRQRVLRDLRIVFKEFTIRIH

Nucleotide

• Length: 480 bp

>NTDB_id=1154352 AD178_RS09740 WP_000588863.1 1886167..1886646(-) (comX/comX2) [Streptococcus pneumoniae strain PT8105 isolate 2RLC4]
ATGATTAAAGAATTGTATGAAGAAGTCCAAGGGACTGTGTATAAGTGTAGAAATGAATATTACCTTCATTTATGGGAATT
GTCGGATTGGGACCAAGAAGGCATGCTCTGCTTACATGAATTGATTAGTAGAGAAGAAGGACTGGCAGACGATATTCCAC
GTTTAAGGAAATATTTCAAAACCAAGTTTCGAAATCGAATTTTAGACTATATCCGTAAGCAGGAAAGTCAGAAGCGTAGA
TACGATAAAGAACCCTATGAAGAAGTGGGTGAGATCAGTCATCGTATAAGTGAGGGGGGTCTCTGGCTAGATGATTATTA
TCTCTTTCATGAAACACTAAGAGATTATAGAAACAAACAAAGTAAAGAGAAACAAGAAGAACTAGAACGCGTCTTAAGCA
ATGAACGATTTCGAGGGCGTCAAAGAGTATTAAGAGACTTACGCATTGTGTTTAAGGAGTTTACTATCCGTATCCACTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comX/comX2	Streptococcus pneumoniae Rx1	98.742	100	0.987
comX/comX1	Streptococcus pneumoniae Rx1	98.742	100	0.987
comX/comX2	Streptococcus pneumoniae D39	98.742	100	0.987
comX/comX1	Streptococcus pneumoniae D39	98.742	100	0.987
comX/comX2	Streptococcus pneumoniae R6	98.742	100	0.987
comX/comX1	Streptococcus pneumoniae R6	98.742	100	0.987
comX/comX2	Streptococcus pneumoniae TIGR4	98.113	100	0.981
comX/comX1	Streptococcus pneumoniae TIGR4	98.113	100	0.981
comX/sigX/comX1/sigX1	Streptococcus mitis NCTC 12261	91.195	100	0.912
comX/sigX/comX2/sigX2	Streptococcus mitis NCTC 12261	91.195	100	0.912
comX/sigX/comX2/sigX2	Streptococcus mitis SK321	90.446	98.742	0.893
comX/sigX/comX1/sigX1	Streptococcus mitis SK321	89.809	98.742	0.887
comR/comR2	Streptococcus gordonii str. Challis substr. CH1	48.408	98.742	0.478
comR/comR1	Streptococcus gordonii str. Challis substr. CH1	48.408	98.742	0.478
comX/sigX	Streptococcus mutans UA159	46	94.34	0.434
comX/sigX	Streptococcus suis isolate S10	45.033	94.969	0.428
comX/sigX	Streptococcus suis D9	45.033	94.969	0.428
comX/sigX	Streptococcus suis P1/7	45.033	94.969	0.428
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS315	39.216	96.226	0.377
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS315	39.216	96.226	0.377
comX/sigX/comX2/sigX2	Streptococcus pyogenes JRS4	40	94.34	0.377
comX/sigX/comX1/sigX1	Streptococcus pyogenes JRS4	40	94.34	0.377
comX/sigX/comX2/sigX2	Streptococcus pyogenes MGAS8232	40	94.34	0.377
comX/sigX/comX1/sigX1	Streptococcus pyogenes MGAS8232	40	94.34	0.377