Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | CKV88_RS07065 | Genome accession | NZ_LT906460 |
| Coordinates | 1545879..1546190 (-) | Length | 103 a.a. |
| NCBI ID | WP_002464336.1 | Uniprot ID | G5JJI1 |
| Organism | Staphylococcus simiae strain NCTC13838 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1540879..1551190
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV88_RS07030 (SAMEA4384339_01427) | gcvPA | 1541430..1542779 (-) | 1350 | WP_002464330.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
| CKV88_RS07035 (SAMEA4384339_01428) | gcvT | 1542801..1543892 (-) | 1092 | WP_002464331.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| CKV88_RS07040 | - | 1544068..1544592 (-) | 525 | WP_002464332.1 | shikimate kinase | - |
| CKV88_RS07050 (SAMEA4384339_01430) | - | 1544757..1545206 (-) | 450 | WP_002464333.1 | competence type IV pilus minor pilin ComGF | - |
| CKV88_RS07055 (SAMEA4384339_01431) | - | 1545172..1545465 (-) | 294 | WP_002464334.1 | hypothetical protein | - |
| CKV88_RS07060 (SAMEA4384339_01432) | comGD | 1545452..1545889 (-) | 438 | WP_002464335.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CKV88_RS07065 (SAMEA4384339_01433) | comGC | 1545879..1546190 (-) | 312 | WP_002464336.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CKV88_RS07070 (SAMEA4384339_01434) | comGB | 1546204..1547274 (-) | 1071 | WP_002464337.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| CKV88_RS07075 (SAMEA4384339_01435) | comGA | 1547246..1548220 (-) | 975 | WP_002464338.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CKV88_RS07080 (SAMEA4384339_01436) | - | 1548272..1548895 (-) | 624 | WP_002464339.1 | MBL fold metallo-hydrolase | - |
| CKV88_RS07085 (SAMEA4384339_01437) | - | 1548897..1549220 (-) | 324 | WP_002464340.1 | MTH1187 family thiamine-binding protein | - |
| CKV88_RS07090 (SAMEA4384339_01438) | - | 1549220..1550206 (-) | 987 | WP_002464341.1 | ROK family glucokinase | - |
| CKV88_RS07095 (SAMEA4384339_01439) | - | 1550206..1550406 (-) | 201 | WP_095092718.1 | YqgQ family protein | - |
Sequence
Protein
Download Length: 103 a.a. Molecular weight: 11373.52 Da Isoelectric Point: 9.1683
>NTDB_id=1147639 CKV88_RS07065 WP_002464336.1 1545879..1546190(-) (comGC) [Staphylococcus simiae strain NCTC13838]
MKKFLFKTKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHVQTTGCKAQVKMVNSQIEAYLLKHNSNPSTIDDLVAEGFI
KEDQKTCKSGEKITISNGEAVAN
MKKFLFKTKAFTLIEMLLVLLIISLLLILIIPNIAKQTAHVQTTGCKAQVKMVNSQIEAYLLKHNSNPSTIDDLVAEGFI
KEDQKTCKSGEKITISNGEAVAN
Nucleotide
Download Length: 312 bp
>NTDB_id=1147639 CKV88_RS07065 WP_002464336.1 1545879..1546190(-) (comGC) [Staphylococcus simiae strain NCTC13838]
ATGAAGAAATTTTTATTTAAAACTAAAGCTTTTACCTTAATCGAGATGTTACTTGTTTTATTAATTATCAGTTTATTATT
AATTTTAATTATACCTAATATAGCTAAACAAACAGCACATGTTCAAACGACTGGTTGTAAAGCTCAAGTGAAAATGGTGA
ATAGTCAAATAGAAGCATATTTATTAAAGCATAATAGTAATCCATCAACGATTGATGATCTTGTAGCTGAAGGCTTTATT
AAAGAAGACCAAAAGACATGTAAATCTGGTGAAAAAATTACAATAAGTAATGGAGAAGCAGTTGCCAATTAA
ATGAAGAAATTTTTATTTAAAACTAAAGCTTTTACCTTAATCGAGATGTTACTTGTTTTATTAATTATCAGTTTATTATT
AATTTTAATTATACCTAATATAGCTAAACAAACAGCACATGTTCAAACGACTGGTTGTAAAGCTCAAGTGAAAATGGTGA
ATAGTCAAATAGAAGCATATTTATTAAAGCATAATAGTAATCCATCAACGATTGATGATCTTGTAGCTGAAGGCTTTATT
AAAGAAGACCAAAAGACATGTAAATCTGGTGAAAAAATTACAATAAGTAATGGAGAAGCAGTTGCCAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
86.408 |
100 |
0.864 |
| comGC | Staphylococcus aureus N315 |
86.408 |
100 |
0.864 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
46.465 |
96.117 |
0.447 |
| comGC/cglC | Streptococcus mitis SK321 |
47.872 |
91.262 |
0.437 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
46.809 |
91.262 |
0.427 |
| comGC/cglC | Streptococcus pneumoniae D39 |
46.809 |
91.262 |
0.427 |
| comGC/cglC | Streptococcus pneumoniae R6 |
46.809 |
91.262 |
0.427 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
46.809 |
91.262 |
0.427 |
| comYC | Streptococcus suis isolate S10 |
50.588 |
82.524 |
0.417 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
52.564 |
75.728 |
0.398 |
| comYC | Streptococcus mutans UA140 |
52.632 |
73.786 |
0.388 |
| comYC | Streptococcus mutans UA159 |
52.632 |
73.786 |
0.388 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
48.148 |
78.641 |
0.379 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
42.857 |
88.35 |
0.379 |