Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | CKV88_RS07075 | Genome accession | NZ_LT906460 |
| Coordinates | 1547246..1548220 (-) | Length | 324 a.a. |
| NCBI ID | WP_002464338.1 | Uniprot ID | - |
| Organism | Staphylococcus simiae strain NCTC13838 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1542246..1553220
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CKV88_RS07035 (SAMEA4384339_01428) | gcvT | 1542801..1543892 (-) | 1092 | WP_002464331.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| CKV88_RS07040 | - | 1544068..1544592 (-) | 525 | WP_002464332.1 | shikimate kinase | - |
| CKV88_RS07050 (SAMEA4384339_01430) | - | 1544757..1545206 (-) | 450 | WP_002464333.1 | competence type IV pilus minor pilin ComGF | - |
| CKV88_RS07055 (SAMEA4384339_01431) | - | 1545172..1545465 (-) | 294 | WP_002464334.1 | hypothetical protein | - |
| CKV88_RS07060 (SAMEA4384339_01432) | comGD | 1545452..1545889 (-) | 438 | WP_002464335.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| CKV88_RS07065 (SAMEA4384339_01433) | comGC | 1545879..1546190 (-) | 312 | WP_002464336.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CKV88_RS07070 (SAMEA4384339_01434) | comGB | 1546204..1547274 (-) | 1071 | WP_002464337.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| CKV88_RS07075 (SAMEA4384339_01435) | comGA | 1547246..1548220 (-) | 975 | WP_002464338.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CKV88_RS07080 (SAMEA4384339_01436) | - | 1548272..1548895 (-) | 624 | WP_002464339.1 | MBL fold metallo-hydrolase | - |
| CKV88_RS07085 (SAMEA4384339_01437) | - | 1548897..1549220 (-) | 324 | WP_002464340.1 | MTH1187 family thiamine-binding protein | - |
| CKV88_RS07090 (SAMEA4384339_01438) | - | 1549220..1550206 (-) | 987 | WP_002464341.1 | ROK family glucokinase | - |
| CKV88_RS07095 (SAMEA4384339_01439) | - | 1550206..1550406 (-) | 201 | WP_095092718.1 | YqgQ family protein | - |
| CKV88_RS07100 (SAMEA4384339_01440) | - | 1550390..1551850 (-) | 1461 | WP_095092720.1 | rhomboid family intramembrane serine protease | - |
| CKV88_RS07105 (SAMEA4384339_01441) | - | 1551862..1552401 (-) | 540 | WP_002464343.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| CKV88_RS07110 (SAMEA4384339_01442) | rpmG | 1552844..1552993 (-) | 150 | WP_002464344.1 | 50S ribosomal protein L33 | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 36974.91 Da Isoelectric Point: 7.9561
>NTDB_id=1147641 CKV88_RS07075 WP_002464338.1 1547246..1548220(-) (comGA) [Staphylococcus simiae strain NCTC13838]
MKILFQTIVNKAIDKGASDIHFIPVKSDIHIKFRINDNLEEYEQINLNVYQKLIVYMKFQAGLDVSTYQVAQSGRYSYQY
NKLYFLRISTLPLSLGLESCVIRIVPQYLQNQQSPYNFNDFKHLMNKKQGLLLFSGPTGSGKTTLMYQMVAFANKELNLN
VVSIEDPIEIQLPGIVQVNVNEKAGINYVNTFKAILRCDPDVILIGEIRDKEVAKCVIQASLSGHLVLTTLHANDCKGAI
LRLLEMGISVQELLQSTNLIINQRLVTTTSNDRQLVCEIMTQQQMHYFFDNNQSLPRTFEKLESKLSDMTRAGVICEKTM
DKYI
MKILFQTIVNKAIDKGASDIHFIPVKSDIHIKFRINDNLEEYEQINLNVYQKLIVYMKFQAGLDVSTYQVAQSGRYSYQY
NKLYFLRISTLPLSLGLESCVIRIVPQYLQNQQSPYNFNDFKHLMNKKQGLLLFSGPTGSGKTTLMYQMVAFANKELNLN
VVSIEDPIEIQLPGIVQVNVNEKAGINYVNTFKAILRCDPDVILIGEIRDKEVAKCVIQASLSGHLVLTTLHANDCKGAI
LRLLEMGISVQELLQSTNLIINQRLVTTTSNDRQLVCEIMTQQQMHYFFDNNQSLPRTFEKLESKLSDMTRAGVICEKTM
DKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=1147641 CKV88_RS07075 WP_002464338.1 1547246..1548220(-) (comGA) [Staphylococcus simiae strain NCTC13838]
ATGAAGATTTTATTTCAAACTATAGTCAATAAAGCCATAGACAAGGGGGCGAGTGACATTCACTTTATACCAGTGAAAAG
TGACATTCATATTAAATTTAGGATCAATGATAATTTAGAAGAATATGAACAAATAAATCTAAATGTTTATCAGAAATTAA
TAGTATATATGAAGTTCCAAGCTGGATTAGATGTTTCAACATATCAAGTTGCTCAAAGTGGACGTTATAGTTATCAGTAC
AATAAACTTTATTTTTTAAGAATATCAACTTTGCCGTTATCATTGGGTTTAGAAAGTTGTGTTATCCGTATTGTTCCTCA
ATATTTACAAAACCAACAATCACCTTATAATTTTAATGATTTTAAACATTTAATGAACAAAAAACAAGGATTATTACTAT
TCAGTGGTCCAACTGGTTCAGGTAAGACAACTTTAATGTATCAAATGGTTGCATTTGCCAATAAAGAATTAAATTTGAAT
GTTGTTTCAATCGAAGATCCTATAGAAATTCAATTACCTGGAATTGTCCAAGTAAATGTAAATGAAAAAGCAGGTATCAA
TTATGTTAATACATTTAAGGCGATTTTACGATGTGATCCCGATGTTATATTAATAGGAGAAATTAGAGATAAAGAAGTTG
CTAAATGCGTGATACAAGCAAGTTTAAGTGGTCATTTAGTGTTAACAACATTACATGCTAACGATTGCAAAGGTGCTATA
TTACGTTTACTAGAAATGGGTATTTCAGTCCAAGAATTACTACAGTCGACTAATTTAATCATTAATCAGCGCTTGGTGAC
AACAACATCAAATGATAGACAGTTGGTATGTGAAATTATGACTCAGCAACAAATGCATTATTTTTTTGATAATAATCAAT
CTTTACCACGTACCTTTGAAAAATTAGAAAGTAAACTAAGTGATATGACAAGAGCAGGTGTCATTTGTGAGAAAACAATG
GATAAATATATTTAA
ATGAAGATTTTATTTCAAACTATAGTCAATAAAGCCATAGACAAGGGGGCGAGTGACATTCACTTTATACCAGTGAAAAG
TGACATTCATATTAAATTTAGGATCAATGATAATTTAGAAGAATATGAACAAATAAATCTAAATGTTTATCAGAAATTAA
TAGTATATATGAAGTTCCAAGCTGGATTAGATGTTTCAACATATCAAGTTGCTCAAAGTGGACGTTATAGTTATCAGTAC
AATAAACTTTATTTTTTAAGAATATCAACTTTGCCGTTATCATTGGGTTTAGAAAGTTGTGTTATCCGTATTGTTCCTCA
ATATTTACAAAACCAACAATCACCTTATAATTTTAATGATTTTAAACATTTAATGAACAAAAAACAAGGATTATTACTAT
TCAGTGGTCCAACTGGTTCAGGTAAGACAACTTTAATGTATCAAATGGTTGCATTTGCCAATAAAGAATTAAATTTGAAT
GTTGTTTCAATCGAAGATCCTATAGAAATTCAATTACCTGGAATTGTCCAAGTAAATGTAAATGAAAAAGCAGGTATCAA
TTATGTTAATACATTTAAGGCGATTTTACGATGTGATCCCGATGTTATATTAATAGGAGAAATTAGAGATAAAGAAGTTG
CTAAATGCGTGATACAAGCAAGTTTAAGTGGTCATTTAGTGTTAACAACATTACATGCTAACGATTGCAAAGGTGCTATA
TTACGTTTACTAGAAATGGGTATTTCAGTCCAAGAATTACTACAGTCGACTAATTTAATCATTAATCAGCGCTTGGTGAC
AACAACATCAAATGATAGACAGTTGGTATGTGAAATTATGACTCAGCAACAAATGCATTATTTTTTTGATAATAATCAAT
CTTTACCACGTACCTTTGAAAAATTAGAAAGTAAACTAAGTGATATGACAAGAGCAGGTGTCATTTGTGAGAAAACAATG
GATAAATATATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
81.173 |
100 |
0.812 |
| comGA | Staphylococcus aureus N315 |
81.173 |
100 |
0.812 |