Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CKV88_RS07060 Genome accession   NZ_LT906460
Coordinates   1545452..1545889 (-) Length   145 a.a.
NCBI ID   WP_002464335.1    Uniprot ID   -
Organism   Staphylococcus simiae strain NCTC13838     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1540452..1550889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV88_RS07030 (SAMEA4384339_01427) gcvPA 1541430..1542779 (-) 1350 WP_002464330.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  CKV88_RS07035 (SAMEA4384339_01428) gcvT 1542801..1543892 (-) 1092 WP_002464331.1 glycine cleavage system aminomethyltransferase GcvT -
  CKV88_RS07040 - 1544068..1544592 (-) 525 WP_002464332.1 shikimate kinase -
  CKV88_RS07050 (SAMEA4384339_01430) - 1544757..1545206 (-) 450 WP_002464333.1 competence type IV pilus minor pilin ComGF -
  CKV88_RS07055 (SAMEA4384339_01431) - 1545172..1545465 (-) 294 WP_002464334.1 hypothetical protein -
  CKV88_RS07060 (SAMEA4384339_01432) comGD 1545452..1545889 (-) 438 WP_002464335.1 competence type IV pilus minor pilin ComGD Machinery gene
  CKV88_RS07065 (SAMEA4384339_01433) comGC 1545879..1546190 (-) 312 WP_002464336.1 competence type IV pilus major pilin ComGC Machinery gene
  CKV88_RS07070 (SAMEA4384339_01434) comGB 1546204..1547274 (-) 1071 WP_002464337.1 competence type IV pilus assembly protein ComGB Machinery gene
  CKV88_RS07075 (SAMEA4384339_01435) comGA 1547246..1548220 (-) 975 WP_002464338.1 competence type IV pilus ATPase ComGA Machinery gene
  CKV88_RS07080 (SAMEA4384339_01436) - 1548272..1548895 (-) 624 WP_002464339.1 MBL fold metallo-hydrolase -
  CKV88_RS07085 (SAMEA4384339_01437) - 1548897..1549220 (-) 324 WP_002464340.1 MTH1187 family thiamine-binding protein -
  CKV88_RS07090 (SAMEA4384339_01438) - 1549220..1550206 (-) 987 WP_002464341.1 ROK family glucokinase -
  CKV88_RS07095 (SAMEA4384339_01439) - 1550206..1550406 (-) 201 WP_095092718.1 YqgQ family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16830.05 Da        Isoelectric Point: 10.4663

>NTDB_id=1147638 CKV88_RS07060 WP_002464335.1 1545452..1545889(-) (comGD) [Staphylococcus simiae strain NCTC13838]
MPINKVKAFTMIEMLFVLLMVSIILLTTLTSKSLRNLETMNSEMQLSSFILQLDYLKSKAIITQGPILIQFVKHSNQVKV
TENNKTSYFLSINNAEIISINKVNYLYFDKRGNIKPFGSITIKVNKAYYKVIFHIEKGRIRYEKL

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1147638 CKV88_RS07060 WP_002464335.1 1545452..1545889(-) (comGD) [Staphylococcus simiae strain NCTC13838]
TTGCCAATTAACAAAGTTAAAGCATTTACAATGATAGAAATGTTATTTGTGCTGTTAATGGTTTCGATTATTTTATTGAC
TACATTAACTTCAAAAAGTCTCAGGAATCTTGAAACAATGAATAGTGAAATGCAACTATCATCATTTATTTTACAACTGG
ATTATCTGAAATCTAAAGCTATTATAACCCAAGGTCCCATTTTAATTCAGTTTGTTAAACATTCAAATCAAGTTAAAGTA
ACTGAAAACAATAAAACTTCATATTTTTTATCAATAAATAATGCTGAAATAATTAGTATAAATAAAGTAAATTATTTATA
TTTTGACAAGAGGGGTAATATTAAGCCATTTGGGAGCATAACTATTAAAGTGAATAAAGCATATTATAAAGTTATATTTC
ATATAGAAAAAGGTAGGATTCGTTATGAGAAATTATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

53.103

100

0.531
  comGD Staphylococcus aureus N315

53.103

100

0.531

Multiple sequence alignment