Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | XFHB_RS12635 | Genome accession | NZ_CP009885 |
| Coordinates | 2552850..2553284 (+) | Length | 144 a.a. |
| NCBI ID | WP_088578452.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa strain Hib4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2547850..2558284
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XFHB_RS12610 (XFHB_11865) | coaE | 2547958..2548581 (-) | 624 | WP_023907058.1 | dephospho-CoA kinase | - |
| XFHB_RS12615 (XFHB_11870) | pilD | 2548593..2549456 (-) | 864 | WP_010894958.1 | A24 family peptidase | Machinery gene |
| XFHB_RS12620 (XFHB_11875) | pilC | 2549463..2550665 (-) | 1203 | WP_010894959.1 | type II secretion system F family protein | Machinery gene |
| XFHB_RS12625 (XFHB_11880) | pilA/pilAI | 2551107..2551553 (+) | 447 | WP_010894960.1 | pilin | Machinery gene |
| XFHB_RS12630 (XFHB_11885) | - | 2551814..2552017 (-) | 204 | WP_010894961.1 | hypothetical protein | - |
| XFHB_RS12635 (XFHB_11890) | pilA/pilAI | 2552850..2553284 (+) | 435 | WP_088578452.1 | pilin | Machinery gene |
| XFHB_RS12640 (XFHB_11895) | - | 2553721..2553951 (-) | 231 | WP_157293270.1 | hypothetical protein | - |
| XFHB_RS12645 (XFHB_11900) | pilB | 2554103..2555836 (+) | 1734 | WP_088578454.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| XFHB_RS12650 (XFHB_11905) | - | 2555930..2557342 (-) | 1413 | WP_088578455.1 | sigma-54 dependent transcriptional regulator | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 14876.32 Da Isoelectric Point: 8.5024
>NTDB_id=114277 XFHB_RS12635 WP_088578452.1 2552850..2553284(+) (pilA/pilAI) [Xylella fastidiosa strain Hib4]
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVVAGLAEITPGKAQAEIRIAEARATTVVGDIGLRTPTARCAV
AVDIKTDAESTITCTLIGNTQVNGQTIKLSRAVDNAAGTGGLWTCSTTVAEALAPGGCTSTKKS
MKKQQGFTLIELMIVIAIIAILAAIALPMYQNYVARSQVVAGLAEITPGKAQAEIRIAEARATTVVGDIGLRTPTARCAV
AVDIKTDAESTITCTLIGNTQVNGQTIKLSRAVDNAAGTGGLWTCSTTVAEALAPGGCTSTKKS
Nucleotide
Download Length: 435 bp
>NTDB_id=114277 XFHB_RS12635 WP_088578452.1 2552850..2553284(+) (pilA/pilAI) [Xylella fastidiosa strain Hib4]
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATCGCCATCCTGGCAGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAGTCGTAGCGGGACTGGCCGAAATTACACCCGGCAAAGCACAAGCCG
AAATCCGTATTGCCGAGGCAAGGGCAACAACTGTTGTGGGCGATATTGGTCTACGCACCCCAACCGCTCGTTGCGCCGTT
GCTGTCGACATCAAGACCGATGCTGAAAGCACAATTACATGTACGCTTATTGGTAATACCCAAGTCAACGGTCAAACCAT
TAAGTTGAGTCGCGCCGTCGATAACGCCGCAGGCACAGGGGGGCTGTGGACCTGTAGCACAACCGTTGCCGAAGCGTTGG
CACCAGGAGGCTGTACTTCGACCAAGAAGAGCTAA
ATGAAAAAGCAACAAGGCTTCACTTTGATCGAGCTGATGATCGTCATTGCGATCATCGCCATCCTGGCAGCGATCGCTCT
GCCCATGTACCAAAATTATGTCGCCAGGTCTCAAGTCGTAGCGGGACTGGCCGAAATTACACCCGGCAAAGCACAAGCCG
AAATCCGTATTGCCGAGGCAAGGGCAACAACTGTTGTGGGCGATATTGGTCTACGCACCCCAACCGCTCGTTGCGCCGTT
GCTGTCGACATCAAGACCGATGCTGAAAGCACAATTACATGTACGCTTATTGGTAATACCCAAGTCAACGGTCAAACCAT
TAAGTTGAGTCGCGCCGTCGATAACGCCGCAGGCACAGGGGGGCTGTGGACCTGTAGCACAACCGTTGCCGAAGCGTTGG
CACCAGGAGGCTGTACTTCGACCAAGAAGAGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
46.479 |
98.611 |
0.458 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.401 |
100 |
0.451 |
| pilA | Vibrio cholerae strain A1552 |
41.401 |
100 |
0.451 |
| pilA | Vibrio cholerae C6706 |
41.401 |
100 |
0.451 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
45.714 |
97.222 |
0.444 |
| pilA | Acinetobacter baumannii strain A118 |
44.444 |
100 |
0.444 |
| pilA | Pseudomonas aeruginosa PAK |
40.385 |
100 |
0.438 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.662 |
100 |
0.403 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
38.571 |
97.222 |
0.375 |
| comP | Acinetobacter baylyi ADP1 |
35.333 |
100 |
0.368 |