Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HPOKI898_RS00215 Genome accession   NZ_CP006827
Coordinates   38989..40125 (+) Length   378 a.a.
NCBI ID   WP_025276551.1    Uniprot ID   -
Organism   Helicobacter pylori oki898     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 33989..45125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI898_RS00180 (HPOKI898_00210) panD 34420..34770 (+) 351 WP_025276548.1 aspartate 1-decarboxylase -
  HPOKI898_RS00185 (HPOKI898_00215) - 34781..35074 (+) 294 WP_000347915.1 YbaB/EbfC family nucleoid-associated protein -
  HPOKI898_RS00190 (HPOKI898_00220) - 35074..36069 (+) 996 WP_025275450.1 PDZ domain-containing protein -
  HPOKI898_RS00195 (HPOKI898_00225) comB6 36077..37132 (+) 1056 WP_025276549.1 P-type conjugative transfer protein TrbL Machinery gene
  HPOKI898_RS00200 (HPOKI898_00230) comB7 37148..37261 (+) 114 WP_001217873.1 hypothetical protein Machinery gene
  HPOKI898_RS00205 (HPOKI898_00235) comB8 37258..38001 (+) 744 WP_025275452.1 type IV secretion system protein Machinery gene
  HPOKI898_RS00210 (HPOKI898_00240) comB9 38001..38996 (+) 996 WP_025276550.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPOKI898_RS00215 (HPOKI898_00245) comB10 38989..40125 (+) 1137 WP_025276551.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPOKI898_RS00220 (HPOKI898_00250) - 40195..41613 (+) 1419 WP_025276552.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPOKI898_RS00225 (HPOKI898_00255) gmd 41623..42768 (+) 1146 WP_025275456.1 GDP-mannose 4,6-dehydratase -
  HPOKI898_RS00230 (HPOKI898_00260) - 42761..43693 (+) 933 WP_025275457.1 GDP-L-fucose synthase family protein -
  HPOKI898_RS08525 - 43718..43840 (-) 123 WP_268744387.1 hypothetical protein -
  HPOKI898_RS00240 (HPOKI898_00270) hypE 44007..45005 (-) 999 WP_025276553.1 hydrogenase expression/formation protein HypE -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 42084.58 Da        Isoelectric Point: 9.9312

>NTDB_id=114274 HPOKI898_RS00215 WP_025276551.1 38989..40125(+) (comB10) [Helicobacter pylori oki898]
MNKWLKGAVVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNHSKEETFTNPPIEPKTNTTPPKKDFSSKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNSRGNKEGATNFFGDYLLMQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=114274 HPOKI898_RS00215 WP_025276551.1 38989..40125(+) (comB10) [Helicobacter pylori oki898]
ATGAATAAGTGGCTTAAGGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAGGATTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACCACTCTAAAGAAGAAACTTTTACTAACCCTCCTATAGAACCAAAAAC
AAACACAACCCCCCCTAAAAAAGACTTTTCTTCAAAGCAATTAGATTTACTAGCCGCTCGCATCACCCCCTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAGGGCATTGATGGTTTCACTAACCTTAAAGAA
AAAGACATCGCTACTAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTCTCATCACGCC
CATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTCGCTCACATGGGAAAAGCCGTTTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGT
CGCATCATCACTCCCCATGGCATCAATATCATGCTCACTAACGCTAAGGGGGCGGACATTAAAGGTTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTGTTGATTG
GGATCACTTCGGCTTTAAACAGCAGAGGCAATAAAGAAGGAGCCACCAATTTCTTTGGGGATTACCTCTTAATGCAATTG
ATGAGACAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTTTTCCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(173-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

96.825

100

0.968

Multiple sequence alignment