Detailed information NTG0114270

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPOKI898_RS00195
• Genome accession: NZ_CP006827
• Coordinates: 36077..37132 (+)
• Length: 351 a.a.
• NCBI ID: WP_025276549.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki898
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 31077..42132

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI898_RS00165 (HPOKI898_00195)	-	31494..31907 (+)	414	WP_001023008.1	universal stress protein	-
HPOKI898_RS00170 (HPOKI898_00200)	-	31930..32205 (+)	276	WP_025276546.1	ATP-dependent Clp protease adaptor ClpS	-
HPOKI898_RS00175 (HPOKI898_00205)	-	32205..34430 (+)	2226	WP_025276547.1	AAA family ATPase	-
HPOKI898_RS00180 (HPOKI898_00210)	panD	34420..34770 (+)	351	WP_025276548.1	aspartate 1-decarboxylase	-
HPOKI898_RS00185 (HPOKI898_00215)	-	34781..35074 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI898_RS00190 (HPOKI898_00220)	-	35074..36069 (+)	996	WP_025275450.1	PDZ domain-containing protein	-
HPOKI898_RS00195 (HPOKI898_00225)	comB6	36077..37132 (+)	1056	WP_025276549.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI898_RS00200 (HPOKI898_00230)	comB7	37148..37261 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPOKI898_RS00205 (HPOKI898_00235)	comB8	37258..38001 (+)	744	WP_025275452.1	type IV secretion system protein	Machinery gene
HPOKI898_RS00210 (HPOKI898_00240)	comB9	38001..38996 (+)	996	WP_025276550.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI898_RS00215 (HPOKI898_00245)	comB10	38989..40125 (+)	1137	WP_025276551.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI898_RS00220 (HPOKI898_00250)	-	40195..41613 (+)	1419	WP_025276552.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39794.71 Da
• Isoelectric Point: 9.0413

>NTDB_id=114270 HPOKI898_RS00195 WP_025276549.1 36077..37132(+) (comB6) [Helicobacter pylori oki898]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALLESLWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEVHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTSPAPSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=114270 HPOKI898_RS00195 WP_025276549.1 36077..37132(+) (comB6) [Helicobacter pylori oki898]
ATGAAAAATGACGCTTATGAGATTATTCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTACAGAAGTT
TGAAAGAACAGAATTTCTTCAGCACTAGCGCGCTTTTAGAATCGTTATGGTTTGTGGGGTTTTTTGCACTTTTTAACTAC
GCTTTAAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATTTTTATTGCACCTAACATGATCACTCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCCGTGTGGCTTTTTTTAAGTATTTTGCAAGCGCTTTTTTTGAGCGTTCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGTGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGAAGCGTTGTGGTTATATGCCTAAAAAAGTGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAATAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCTCTCAATTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGTAGCGTTTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAAGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	95.157	100	0.952