Detailed information NTG0114273

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: HPOKI898_RS00210
• Genome accession: NZ_CP006827
• Coordinates: 38001..38996 (+)
• Length: 331 a.a.
• NCBI ID: WP_025276550.1
• Uniprot ID: -
• Organism: Helicobacter pylori oki898
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33001..43996

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPOKI898_RS00180 (HPOKI898_00210)	panD	34420..34770 (+)	351	WP_025276548.1	aspartate 1-decarboxylase	-
HPOKI898_RS00185 (HPOKI898_00215)	-	34781..35074 (+)	294	WP_000347915.1	YbaB/EbfC family nucleoid-associated protein	-
HPOKI898_RS00190 (HPOKI898_00220)	-	35074..36069 (+)	996	WP_025275450.1	PDZ domain-containing protein	-
HPOKI898_RS00195 (HPOKI898_00225)	comB6	36077..37132 (+)	1056	WP_025276549.1	P-type conjugative transfer protein TrbL	Machinery gene
HPOKI898_RS00200 (HPOKI898_00230)	comB7	37148..37261 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
HPOKI898_RS00205 (HPOKI898_00235)	comB8	37258..38001 (+)	744	WP_025275452.1	type IV secretion system protein	Machinery gene
HPOKI898_RS00210 (HPOKI898_00240)	comB9	38001..38996 (+)	996	WP_025276550.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPOKI898_RS00215 (HPOKI898_00245)	comB10	38989..40125 (+)	1137	WP_025276551.1	DNA type IV secretion system protein ComB10	Machinery gene
HPOKI898_RS00220 (HPOKI898_00250)	-	40195..41613 (+)	1419	WP_025276552.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPOKI898_RS00225 (HPOKI898_00255)	gmd	41623..42768 (+)	1146	WP_025275456.1	GDP-mannose 4,6-dehydratase	-
HPOKI898_RS00230 (HPOKI898_00260)	-	42761..43693 (+)	933	WP_025275457.1	GDP-L-fucose synthase family protein	-
HPOKI898_RS08525	-	43718..43840 (-)	123	WP_268744387.1	hypothetical protein	-

Sequence

Protein

• Length: 331 a.a.
• Molecular weight: 38150.94 Da
• Isoelectric Point: 9.3329

>NTDB_id=114273 HPOKI898_RS00210 WP_025276550.1 38001..38996(+) (comB9) [Helicobacter pylori oki898]
MRKFLYALMGFLLAFSALKADDFLEEANETAPAHLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENALENALENAPTNNKPLKEEPLKEEKEETKEKEEETIIIGDNTNAMKIVKKDIQKGYRALKSSQRKW
YCLGICSKKSKPSLMPKEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYL
CIRFVKKGKDE

Nucleotide

• Length: 996 bp

>NTDB_id=114273 HPOKI898_RS00210 WP_025276550.1 38001..38996(+) (comB9) [Helicobacter pylori oki898]
ATGCGGAAATTTTTATATGCCCTCATGGGCTTTTTGTTGGCTTTTAGCGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGCATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGATAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATATTAGAAAG
TAACGATCGTATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCCAATATCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCTAACGCTTTTATGAAGCCACAAAATAAAGAAAATGCCCTTGAAAATGCCCTTGAAAATGCCCCCACAAACAA
CAAGCCCTTAAAAGAAGAACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAAAAGAAGAAGAGACTATAATTATTGGCG
ATAACACTAACGCCATGAAAATCGTTAAAAAAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGG
TATTGTTTAGGGATTTGTTCTAAAAAATCCAAACCCTCTTTGATGCCTAAAGAAATTTTTAACGACAAACAATTCACTTA
TTTCAAATTTGACAAAAAATTAGCGCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTAA
ATACTAGGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGCAAGGACTATTTG
TGCATCCGTTTTGTCAAAAAGGGTAAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-322)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	94.864	100	0.949