Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPOKI898_RS00200 | Genome accession | NZ_CP006827 |
| Coordinates | 37148..37261 (+) | Length | 37 a.a. |
| NCBI ID | WP_001217873.1 | Uniprot ID | G2MCV1 |
| Organism | Helicobacter pylori oki898 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 32148..42261
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPOKI898_RS00175 (HPOKI898_00205) | - | 32205..34430 (+) | 2226 | WP_025276547.1 | AAA family ATPase | - |
| HPOKI898_RS00180 (HPOKI898_00210) | panD | 34420..34770 (+) | 351 | WP_025276548.1 | aspartate 1-decarboxylase | - |
| HPOKI898_RS00185 (HPOKI898_00215) | - | 34781..35074 (+) | 294 | WP_000347915.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPOKI898_RS00190 (HPOKI898_00220) | - | 35074..36069 (+) | 996 | WP_025275450.1 | PDZ domain-containing protein | - |
| HPOKI898_RS00195 (HPOKI898_00225) | comB6 | 36077..37132 (+) | 1056 | WP_025276549.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPOKI898_RS00200 (HPOKI898_00230) | comB7 | 37148..37261 (+) | 114 | WP_001217873.1 | hypothetical protein | Machinery gene |
| HPOKI898_RS00205 (HPOKI898_00235) | comB8 | 37258..38001 (+) | 744 | WP_025275452.1 | type IV secretion system protein | Machinery gene |
| HPOKI898_RS00210 (HPOKI898_00240) | comB9 | 38001..38996 (+) | 996 | WP_025276550.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPOKI898_RS00215 (HPOKI898_00245) | comB10 | 38989..40125 (+) | 1137 | WP_025276551.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPOKI898_RS00220 (HPOKI898_00250) | - | 40195..41613 (+) | 1419 | WP_025276552.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4325.25 Da Isoelectric Point: 9.3572
>NTDB_id=114271 HPOKI898_RS00200 WP_001217873.1 37148..37261(+) (comB7) [Helicobacter pylori oki898]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=114271 HPOKI898_RS00200 WP_001217873.1 37148..37261(+) (comB7) [Helicobacter pylori oki898]
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGAATTTTTTTTGTTATTATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
100 |
100 |
1 |