Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPOKI898_RS00415 Genome accession   NZ_CP006827
Coordinates   88217..89530 (+) Length   437 a.a.
NCBI ID   WP_025276576.1    Uniprot ID   -
Organism   Helicobacter pylori oki898     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 83217..94530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOKI898_RS00395 (HPOKI898_00445) crdR 83531..84172 (+) 642 WP_025276574.1 copper response regulator transcription factor CrdR -
  HPOKI898_RS00400 (HPOKI898_00450) crdS 84138..85340 (+) 1203 WP_080276558.1 copper-sensing histidine kinase CrdS -
  HPOKI898_RS00405 (HPOKI898_00455) - 85343..86743 (+) 1401 WP_025275482.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  HPOKI898_RS00410 (HPOKI898_00460) - 86754..88220 (+) 1467 WP_025275483.1 replicative DNA helicase -
  HPOKI898_RS00415 (HPOKI898_00465) comEC/comE3 88217..89530 (+) 1314 WP_025276576.1 ComEC/Rec2 family competence protein Machinery gene
  HPOKI898_RS00420 (HPOKI898_00470) mqnP 89601..90443 (+) 843 WP_235180717.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPOKI898_RS00425 (HPOKI898_00475) - 90436..90930 (+) 495 WP_025276578.1 hypothetical protein -
  HPOKI898_RS00430 (HPOKI898_00480) - 90943..91449 (+) 507 WP_025276579.1 DUF6115 domain-containing protein -
  HPOKI898_RS00435 (HPOKI898_00485) - 91443..92246 (+) 804 WP_025275488.1 phosphatidylserine decarboxylase -
  HPOKI898_RS00440 (HPOKI898_00490) nadA 92236..93240 (+) 1005 WP_025276580.1 quinolinate synthase NadA -
  HPOKI898_RS00445 (HPOKI898_00495) nadC 93240..94061 (+) 822 WP_025275490.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50296.20 Da        Isoelectric Point: 9.7934

>NTDB_id=114276 HPOKI898_RS00415 WP_025276576.1 88217..89530(+) (comEC/comE3) [Helicobacter pylori oki898]
MKDKTFQGAFELLSTPKEYLVCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYSTIKEPLKNLQYRHAQFFGKFKFCSFLESLKSCFFQTYSFSLTRKQDFKSHLRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTENFFKTSSFLMRSFQVISLS
ALIFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDHLLNMPLTIPTISISSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSTGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=114276 HPOKI898_RS00415 WP_025276576.1 88217..89530(+) (comEC/comE3) [Helicobacter pylori oki898]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCCAAAGAATACCTGGTGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCAATTAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCGACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATTCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGTTCAAATTTTGTTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACACGAAAACAAGATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGCTCATTCCAACGCTTTAGTGGGTAATTTGTATCGAGCGCTTTTTATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAGGGCTAATGCACTAGGGATCAACCACTTACTAGCCATTAGCGGATTCCATTTAGGGATTTT
GAGTGCGAGCGTATATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGCTACTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACGGAAAATTTTTTTAAAACCTCTTCTTTTTTGATGCGATCGTTTCAGGTCATAAGCTTAAGC
GCGCTAATTTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCTGTGGGTTTGGGGTCTTTGTTGGATCACC
TTTTAAACATGCCTTTAACAATCCCTACGATTTCAATCTCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCACGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-385)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

95.423

100

0.954

Multiple sequence alignment