Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DQN35_RS04180 | Genome accession | NZ_LS483442 |
| Coordinates | 793429..793854 (+) | Length | 141 a.a. |
| NCBI ID | WP_011285575.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain NCTC8370 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 788429..798854
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQN35_RS04130 (NCTC8370_00814) | - | 788604..788804 (+) | 201 | WP_002992770.1 | helix-turn-helix domain-containing protein | - |
| DQN35_RS04135 (NCTC8370_00815) | - | 788914..789123 (-) | 210 | WP_011017885.1 | hypothetical protein | - |
| DQN35_RS09380 | - | 789254..789493 (-) | 240 | WP_227874181.1 | hypothetical protein | - |
| DQN35_RS09385 | - | 789727..789915 (+) | 189 | Protein_738 | XRE family transcriptional regulator | - |
| DQN35_RS04150 (NCTC8370_00817) | - | 789929..790759 (+) | 831 | WP_009881060.1 | phage replisome organizer N-terminal domain-containing protein | - |
| DQN35_RS04155 (NCTC8370_00818) | - | 790746..791528 (+) | 783 | WP_011285581.1 | ATP-binding protein | - |
| DQN35_RS04160 (NCTC8370_00820) | - | 791669..792022 (+) | 354 | WP_011285579.1 | hypothetical protein | - |
| DQN35_RS04165 (NCTC8370_00821) | - | 792003..792257 (+) | 255 | WP_011285578.1 | hypothetical protein | - |
| DQN35_RS04170 (NCTC8370_00822) | - | 792279..792761 (+) | 483 | WP_011285577.1 | siphovirus Gp157 family protein | - |
| DQN35_RS04175 (NCTC8370_00823) | - | 792762..793436 (+) | 675 | WP_111713462.1 | ERF family protein | - |
| DQN35_RS04180 (NCTC8370_00824) | ssb | 793429..793854 (+) | 426 | WP_011285575.1 | single-stranded DNA-binding protein | Machinery gene |
| DQN35_RS04185 | - | 793860..794063 (+) | 204 | WP_011106686.1 | hypothetical protein | - |
| DQN35_RS04190 (NCTC8370_00825) | - | 794063..794503 (+) | 441 | WP_011285574.1 | RusA family crossover junction endodeoxyribonuclease | - |
| DQN35_RS04195 (NCTC8370_00826) | - | 794500..794856 (+) | 357 | WP_011284873.1 | hypothetical protein | - |
| DQN35_RS09520 (NCTC8370_00827) | - | 794853..795098 (+) | 246 | WP_011285573.1 | hypothetical protein | - |
| DQN35_RS04205 (NCTC8370_00828) | - | 795098..795334 (+) | 237 | WP_002995955.1 | DUF3310 domain-containing protein | - |
| DQN35_RS09265 (NCTC8370_00829) | - | 795331..795501 (+) | 171 | WP_002995952.1 | hypothetical protein | - |
| DQN35_RS04210 (NCTC8370_00830) | - | 795498..795782 (+) | 285 | WP_011018134.1 | hypothetical protein | - |
| DQN35_RS04215 (NCTC8370_00831) | - | 795784..796416 (+) | 633 | WP_111713463.1 | N-6 DNA methylase | - |
| DQN35_RS04220 (NCTC8370_00832) | - | 796419..796943 (+) | 525 | WP_011285572.1 | DUF1642 domain-containing protein | - |
| DQN35_RS04225 (NCTC8370_00833) | - | 796940..797206 (+) | 267 | WP_011018131.1 | hypothetical protein | - |
| DQN35_RS04230 (NCTC8370_00834) | - | 797492..797926 (+) | 435 | WP_011054810.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15995.63 Da Isoelectric Point: 4.5748
>NTDB_id=1141655 DQN35_RS04180 WP_011285575.1 793429..793854(+) (ssb) [Streptococcus pyogenes strain NCTC8370]
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGVTGRIQTR
NYENQQEQRVYVTEVVAESFQMLESRNSQQQSGQDNSSQNDNSQPFGNSNPMDISDDDLPF
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGVTGRIQTR
NYENQQEQRVYVTEVVAESFQMLESRNSQQQSGQDNSSQNDNSQPFGNSNPMDISDDDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=1141655 DQN35_RS04180 WP_011285575.1 793429..793854(+) (ssb) [Streptococcus pyogenes strain NCTC8370]
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGAACAACGTGTCTATGTGACGGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTCGAAA
TAGCCAGCAACAATCTGGTCAAGATAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATA
TTTCAGACGATGATCTGCCGTTTTAA
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGAACAACGTGTCTATGTGACGGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTCGAAA
TAGCCAGCAACAATCTGGTCAAGATAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATA
TTTCAGACGATGATCTGCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.294 |
100 |
0.667 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.07 |
100 |
0.66 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.972 |
100 |
0.44 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
43.262 |
100 |
0.433 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
43.262 |
100 |
0.433 |
| ssbB/cilA | Streptococcus mitis SK321 |
43.262 |
100 |
0.433 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
51.786 |
79.433 |
0.411 |
| ssbA | Streptococcus mutans UA159 |
40.426 |
100 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
29.379 |
100 |
0.369 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
49.524 |
74.468 |
0.369 |