Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DQN32_RS06595 Genome accession   NZ_LS483432
Coordinates   1262962..1263381 (-) Length   139 a.a.
NCBI ID   WP_011054759.1    Uniprot ID   A0A5S4TJJ6
Organism   Streptococcus pyogenes strain NCTC13745     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1257962..1268381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN32_RS06530 - 1258307..1258564 (+) 258 WP_011054748.1 hypothetical protein -
  DQN32_RS06550 (NCTC13745_01301) - 1259203..1259643 (-) 441 WP_011017866.1 ArpU family phage packaging/lysis transcriptional regulator -
  DQN32_RS09475 (NCTC13745_01302) - 1259917..1260087 (-) 171 WP_164997036.1 hypothetical protein -
  DQN32_RS06555 (NCTC13745_01303) - 1260084..1260590 (-) 507 WP_011054751.1 DUF1642 domain-containing protein -
  DQN32_RS09480 (NCTC13745_01304) - 1260587..1260757 (-) 171 WP_011054752.1 hypothetical protein -
  DQN32_RS06560 (NCTC13745_01305) - 1260754..1261158 (-) 405 WP_011054753.1 YopX family protein -
  DQN32_RS06565 (NCTC13745_01306) - 1261168..1261437 (-) 270 WP_011054754.1 hypothetical protein -
  DQN32_RS06570 (NCTC13745_01307) - 1261434..1261718 (-) 285 WP_011054755.1 DUF3310 domain-containing protein -
  DQN32_RS06575 (NCTC13745_01308) - 1261712..1261963 (-) 252 WP_011054756.1 hypothetical protein -
  DQN32_RS06580 (NCTC13745_01309) - 1261960..1262316 (-) 357 WP_011054757.1 hypothetical protein -
  DQN32_RS06585 (NCTC13745_01310) - 1262313..1262753 (-) 441 WP_011054758.1 RusA family crossover junction endodeoxyribonuclease -
  DQN32_RS06590 - 1262753..1262956 (-) 204 WP_011106686.1 hypothetical protein -
  DQN32_RS06595 (NCTC13745_01311) ssbA 1262962..1263381 (-) 420 WP_011054759.1 single-stranded DNA-binding protein Machinery gene
  DQN32_RS06600 (NCTC13745_01312) - 1263374..1264048 (-) 675 WP_011054760.1 ERF family protein -
  DQN32_RS06605 (NCTC13745_01313) - 1264049..1264531 (-) 483 WP_011018142.1 siphovirus Gp157 family protein -
  DQN32_RS06610 (NCTC13745_01314) - 1264553..1264807 (-) 255 WP_011054761.1 hypothetical protein -
  DQN32_RS06615 (NCTC13745_01315) - 1264818..1264958 (-) 141 WP_011284979.1 hypothetical protein -
  DQN32_RS06620 (NCTC13745_01316) - 1264955..1265188 (-) 234 WP_011054762.1 hypothetical protein -
  DQN32_RS06625 (NCTC13745_01317) - 1265169..1265582 (-) 414 WP_011054763.1 DnaD domain protein -
  DQN32_RS06630 (NCTC13745_01318) - 1265704..1265961 (-) 258 WP_011106684.1 hypothetical protein -
  DQN32_RS06635 (NCTC13745_01319) - 1266055..1266240 (-) 186 WP_011054765.1 hypothetical protein -
  DQN32_RS06640 (NCTC13745_01320) - 1266269..1266526 (-) 258 WP_002988339.1 hypothetical protein -
  DQN32_RS06650 (NCTC13745_01322) - 1266772..1266939 (-) 168 WP_002986885.1 hypothetical protein -
  DQN32_RS06655 (NCTC13745_01323) - 1267015..1267215 (+) 201 WP_002986887.1 KTSC domain-containing protein -
  DQN32_RS09485 (NCTC13745_01324) - 1267212..1267361 (-) 150 WP_002986888.1 hypothetical protein -
  DQN32_RS06660 (NCTC13745_01325) - 1267394..1268122 (-) 729 WP_011054767.1 phage antirepressor KilAC domain-containing protein -
  DQN32_RS06665 (NCTC13745_01326) - 1268133..1268324 (-) 192 WP_002986891.1 hypothetical protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15649.29 Da        Isoelectric Point: 4.8660

>NTDB_id=1141342 DQN32_RS06595 WP_011054759.1 1262962..1263381(-) (ssbA) [Streptococcus pyogenes strain NCTC13745]
MINNVVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRNQQSGQGNSSQNDNSQPFGNSNPMDISDDDLPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=1141342 DQN32_RS06595 WP_011054759.1 1262962..1263381(-) (ssbA) [Streptococcus pyogenes strain NCTC13745]
ATGATTAATAATGTAGTACTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATTTAGCCAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTAA
TCAACAATCTGGTCAAGGTAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATATTTCAG
ACGATGATCTGCCGTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.857

100

0.691
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.683
  ssbB/cilA Streptococcus pneumoniae TIGR4

46.043

100

0.46
  ssbB/cilA Streptococcus pneumoniae Rx1

45.324

100

0.453
  ssbB/cilA Streptococcus mitis NCTC 12261

45.324

100

0.453
  ssbB/cilA Streptococcus pneumoniae D39

45.324

100

0.453
  ssbB/cilA Streptococcus pneumoniae R6

45.324

100

0.453
  ssbB/cilA Streptococcus mitis SK321

45.324

100

0.453
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.604

100

0.446
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.955

79.856

0.439
  ssbA Streptococcus mutans UA159

41.727

100

0.417
  ssb Vibrio cholerae strain A1552

31.214

100

0.388
  ssb Glaesserella parasuis strain SC1401

28.814

100

0.367

Multiple sequence alignment