Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   DQN21_RS02255 Genome accession   NZ_LS483409
Coordinates   398817..399305 (+) Length   162 a.a.
NCBI ID   WP_077496210.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 393817..404305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS02255 (NCTC13773_00442) comX/sigX 398817..399305 (+) 489 WP_077496210.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQN21_RS02260 (NCTC13773_00443) - 399416..401038 (-) 1623 WP_077496212.1 glycoside hydrolase family 5 protein -
  DQN21_RS02265 (NCTC13773_00444) - 401487..402848 (-) 1362 WP_077496214.1 aspartate kinase -
  DQN21_RS02270 (NCTC13773_00445) - 402942..403589 (+) 648 WP_009853410.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 19523.47 Da        Isoelectric Point: 7.9997

>NTDB_id=1140548 DQN21_RS02255 WP_077496210.1 398817..399305(+) (comX/sigX) [Streptococcus gallolyticus strain NCTC13773]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KRKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGVGAREKLAKVMRGERFEGKKAFLTQIEPFFNEFKN
NF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=1140548 DQN21_RS02255 WP_077496210.1 398817..399305(+) (comX/sigX) [Streptococcus gallolyticus strain NCTC13773]
ATGATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGG
ACGACTTGTCCCTTTATGCCTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAACGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCT
GGCGGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGACTGGGAGTAGGGGCACGAGAGAAATTGGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAAAAAT
AATTTCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.