Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   DQN21_RS01965 Genome accession   NZ_LS483409
Coordinates   339663..340148 (+) Length   161 a.a.
NCBI ID   WP_077496174.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain NCTC13773     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 326541..340554 339663..340148 within 0


Gene organization within MGE regions


Location: 326541..340554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQN21_RS01905 (NCTC13773_00374) - 326541..327065 (-) 525 WP_077496172.1 hypothetical protein -
  DQN21_RS01910 (NCTC13773_00375) - 327695..328471 (+) 777 WP_231873062.1 hypothetical protein -
  DQN21_RS12960 - 328842..329078 (-) 237 Protein_322 cell filamentation protein Fic -
  DQN21_RS12755 (NCTC13773_00376) - 329071..329258 (-) 188 Protein_323 hypothetical protein -
  DQN21_RS01925 (NCTC13773_00377) - 329513..332899 (+) 3387 WP_231873063.1 hypothetical protein -
  DQN21_RS01930 - 333027..333282 (+) 256 Protein_325 type II toxin-antitoxin system Phd/YefM family antitoxin -
  DQN21_RS01935 (NCTC13773_00378) - 333279..333648 (+) 370 Protein_326 type II toxin-antitoxin system death-on-curing family toxin -
  DQN21_RS01965 (NCTC13773_00385) comX/sigX 339663..340148 (+) 486 WP_077496174.1 sigma-70 family RNA polymerase sigma factor Regulator
  DQN21_RS01970 (NCTC13773_00386) - 340288..340554 (+) 267 WP_009853366.1 ACT domain-containing protein -

Sequence

Protein


Download         Length: 161 a.a.        Molecular weight: 19380.34 Da        Isoelectric Point: 7.2415

>NTDB_id=1140544 DQN21_RS01965 WP_077496174.1 339663..340148(+) (comX/sigX) [Streptococcus gallolyticus strain NCTC13773]
MMETFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFCLLQEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESL
KRKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGVGAREKLAKVMRGERFEGKKAFLTQIEPFFNEFRE
K

Nucleotide


Download         Length: 486 bp        

>NTDB_id=1140544 DQN21_RS01965 WP_077496174.1 339663..340148(+) (comX/sigX) [Streptococcus gallolyticus strain NCTC13773]
ATGATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATT
ATGGGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCTGTCTCCTGCAAGAAAAGCCAGACTTGTTGCAGG
ACGACTTGTCCCTTTATGCCTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTG
AAACGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCT
GGCGGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGACTGGGAGTAGGGGCACGAGAGAAATTGGCGA
AGGTGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAGGGAA
AAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.