Detailed information
Bioinformatically predicted
Overview
| Name | comYC | Type | Machinery gene |
| Locus tag | DQM48_RS00725 | Genome accession | NZ_LS483348 |
| Coordinates | 108177..108470 (+) | Length | 97 a.a. |
| NCBI ID | WP_020915989.1 | Uniprot ID | - |
| Organism | Streptococcus lutetiensis strain NCTC8738 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 103177..113470
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM48_RS00710 (NCTC8738_00142) | - | 105829..106197 (+) | 369 | WP_020915986.1 | DUF1033 family protein | - |
| DQM48_RS00715 (NCTC8738_00143) | comYA | 106269..107210 (+) | 942 | WP_020915987.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| DQM48_RS00720 (NCTC8738_00144) | comYB | 107134..108177 (+) | 1044 | WP_020915988.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| DQM48_RS00725 (NCTC8738_00145) | comYC | 108177..108470 (+) | 294 | WP_020915989.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| DQM48_RS00730 (NCTC8738_00146) | comYD | 108454..108885 (+) | 432 | WP_020915990.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| DQM48_RS00735 (NCTC8738_00147) | comYE | 108839..109132 (+) | 294 | WP_020915991.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| DQM48_RS00740 (NCTC8738_00148) | comYF | 109116..109553 (+) | 438 | WP_043894883.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| DQM48_RS00745 (NCTC8738_00149) | comGG | 109525..109938 (+) | 414 | WP_231872460.1 | competence type IV pilus minor pilin ComGG | - |
| DQM48_RS00750 (NCTC8738_00150) | comYH | 109928..110884 (+) | 957 | WP_020915994.1 | class I SAM-dependent methyltransferase | Machinery gene |
| DQM48_RS00755 (NCTC8738_00151) | - | 110938..112137 (+) | 1200 | WP_020915995.1 | acetate kinase | - |
| DQM48_RS00760 (NCTC8738_00152) | - | 112297..112494 (+) | 198 | WP_020915996.1 | helix-turn-helix transcriptional regulator | - |
| DQM48_RS00765 (NCTC8738_00153) | - | 112511..112711 (+) | 201 | WP_111699164.1 | hypothetical protein | - |
| DQM48_RS00770 (NCTC8738_00154) | - | 112712..113167 (+) | 456 | WP_231853254.1 | ABC transporter permease | - |
Sequence
Protein
Download Length: 97 a.a. Molecular weight: 11018.16 Da Isoelectric Point: 10.1006
>NTDB_id=1137798 DQM48_RS00725 WP_020915989.1 108177..108470(+) (comYC) [Streptococcus lutetiensis strain NCTC8738]
MKNIWKKLRKKSVEAFTLVEMLIVLLIIGVLMLLFVPNLSKQKEVVHEKGDAAVVKVVESQMELYEVKTGKQPTVNDLVK
AEYISKDQAQTYNAAKK
MKNIWKKLRKKSVEAFTLVEMLIVLLIIGVLMLLFVPNLSKQKEVVHEKGDAAVVKVVESQMELYEVKTGKQPTVNDLVK
AEYISKDQAQTYNAAKK
Nucleotide
Download Length: 294 bp
>NTDB_id=1137798 DQM48_RS00725 WP_020915989.1 108177..108470(+) (comYC) [Streptococcus lutetiensis strain NCTC8738]
ATGAAAAACATTTGGAAAAAACTACGTAAAAAGTCTGTAGAAGCTTTTACACTTGTGGAGATGTTGATTGTTTTGCTAAT
CATTGGTGTCTTGATGCTGTTATTTGTGCCAAACTTGAGCAAGCAAAAAGAGGTTGTGCATGAAAAAGGAGATGCTGCTG
TTGTCAAAGTTGTCGAAAGTCAGATGGAGCTTTATGAAGTGAAGACAGGTAAACAACCAACTGTAAATGATTTGGTGAAA
GCTGAATATATTTCAAAAGACCAAGCTCAAACATATAATGCGGCTAAAAAATAA
ATGAAAAACATTTGGAAAAAACTACGTAAAAAGTCTGTAGAAGCTTTTACACTTGTGGAGATGTTGATTGTTTTGCTAAT
CATTGGTGTCTTGATGCTGTTATTTGTGCCAAACTTGAGCAAGCAAAAAGAGGTTGTGCATGAAAAAGGAGATGCTGCTG
TTGTCAAAGTTGTCGAAAGTCAGATGGAGCTTTATGAAGTGAAGACAGGTAAACAACCAACTGTAAATGATTTGGTGAAA
GCTGAATATATTTCAAAAGACCAAGCTCAAACATATAATGCGGCTAAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
68.539 |
91.753 |
0.629 |
| comYC | Streptococcus suis isolate S10 |
60.87 |
94.845 |
0.577 |
| comGC/cglC | Streptococcus mitis SK321 |
56.989 |
95.876 |
0.546 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
56.522 |
94.845 |
0.536 |
| comGC/cglC | Streptococcus pneumoniae D39 |
56.522 |
94.845 |
0.536 |
| comGC/cglC | Streptococcus pneumoniae R6 |
56.522 |
94.845 |
0.536 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
56.522 |
94.845 |
0.536 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
56.522 |
94.845 |
0.536 |
| comYC | Streptococcus mutans UA140 |
56.322 |
89.691 |
0.505 |
| comYC | Streptococcus mutans UA159 |
56.322 |
89.691 |
0.505 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
51.685 |
91.753 |
0.474 |
| comGC | Latilactobacillus sakei subsp. sakei 23K |
45.57 |
81.443 |
0.371 |