Detailed information NTG1137801

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: DQM48_RS00740
• Genome accession: NZ_LS483348
• Coordinates: 109116..109553 (+)
• Length: 145 a.a.
• NCBI ID: WP_043894883.1
• Uniprot ID: -
• Organism: Streptococcus lutetiensis strain NCTC8738
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 104116..114553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DQM48_RS00710 (NCTC8738_00142)	-	105829..106197 (+)	369	WP_020915986.1	DUF1033 family protein	-
DQM48_RS00715 (NCTC8738_00143)	comYA	106269..107210 (+)	942	WP_020915987.1	competence type IV pilus ATPase ComGA	Machinery gene
DQM48_RS00720 (NCTC8738_00144)	comYB	107134..108177 (+)	1044	WP_020915988.1	competence type IV pilus assembly protein ComGB	Machinery gene
DQM48_RS00725 (NCTC8738_00145)	comYC	108177..108470 (+)	294	WP_020915989.1	competence type IV pilus major pilin ComGC	Machinery gene
DQM48_RS00730 (NCTC8738_00146)	comYD	108454..108885 (+)	432	WP_020915990.1	competence type IV pilus minor pilin ComGD	Machinery gene
DQM48_RS00735 (NCTC8738_00147)	comYE	108839..109132 (+)	294	WP_020915991.1	competence type IV pilus minor pilin ComGE	Machinery gene
DQM48_RS00740 (NCTC8738_00148)	comYF	109116..109553 (+)	438	WP_043894883.1	competence type IV pilus minor pilin ComGF	Machinery gene
DQM48_RS00745 (NCTC8738_00149)	comGG	109525..109938 (+)	414	WP_231872460.1	competence type IV pilus minor pilin ComGG	-
DQM48_RS00750 (NCTC8738_00150)	comYH	109928..110884 (+)	957	WP_020915994.1	class I SAM-dependent methyltransferase	Machinery gene
DQM48_RS00755 (NCTC8738_00151)	-	110938..112137 (+)	1200	WP_020915995.1	acetate kinase	-
DQM48_RS00760 (NCTC8738_00152)	-	112297..112494 (+)	198	WP_020915996.1	helix-turn-helix transcriptional regulator	-
DQM48_RS00765 (NCTC8738_00153)	-	112511..112711 (+)	201	WP_111699164.1	hypothetical protein	-
DQM48_RS00770 (NCTC8738_00154)	-	112712..113167 (+)	456	WP_231853254.1	ABC transporter permease	-
DQM48_RS00775 (NCTC8738_00155)	-	113182..113817 (+)	636	WP_043894885.1	CPBP family intramembrane glutamic endopeptidase	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16159.52 Da
• Isoelectric Point: 9.8332

>NTDB_id=1137801 DQM48_RS00740 WP_043894883.1 109116..109553(+) (comYF) [Streptococcus lutetiensis strain NCTC8738]
MSRKIRLRAFTLLESLVALLVISGSILVYQGLTQSISSNVHYLSANQEEKWLLFSQQLRSELAGCQLNKVADNKLYVSKG
NQQLAYGLSKADDFRKTNASGQGYQPMFFGVTSSSISQDGNKVIIKLQLGSDMERCFVYTFKTTS

Nucleotide

• Length: 438 bp

>NTDB_id=1137801 DQM48_RS00740 WP_043894883.1 109116..109553(+) (comYF) [Streptococcus lutetiensis strain NCTC8738]
ATGTCACGAAAAATTAGATTAAGAGCTTTTACCCTTTTAGAAAGTTTGGTAGCTTTGCTGGTTATCTCAGGTTCCATATT
GGTTTATCAAGGATTGACCCAAAGCATTTCAAGCAATGTCCATTATTTATCGGCGAATCAAGAGGAAAAATGGTTGCTCT
TTTCTCAGCAGCTGCGTTCTGAGCTTGCTGGTTGTCAGTTGAATAAAGTTGCTGACAACAAACTCTATGTTAGTAAAGGT
AATCAGCAATTGGCTTATGGCTTGTCTAAGGCTGATGATTTTCGAAAAACAAATGCCTCAGGTCAGGGTTATCAACCCAT
GTTCTTTGGCGTGACGTCATCTAGCATCAGTCAGGATGGCAATAAGGTGATAATTAAACTGCAATTAGGCAGTGATATGG
AGAGATGTTTTGTTTACACTTTTAAGACGACAAGTTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-129)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.696	95.172	0.559
comYF	Streptococcus mutans UA159	57.971	95.172	0.552
comGF/cglF	Streptococcus pneumoniae Rx1	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae D39	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae R6	45.652	95.172	0.434
comGF/cglF	Streptococcus pneumoniae TIGR4	45.652	95.172	0.434
comGF	Lactococcus lactis subsp. cremoris KW2	43.972	97.241	0.428
comGF/cglF	Streptococcus mitis NCTC 12261	43.885	95.862	0.421
comGF/cglF	Streptococcus mitis SK321	43.165	95.862	0.414