Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | DQM39_RS04800 | Genome accession | NZ_LS483298 |
| Coordinates | 897700..898119 (+) | Length | 139 a.a. |
| NCBI ID | WP_021340323.1 | Uniprot ID | - |
| Organism | Streptococcus pyogenes strain NCTC8225 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 885190..936675 | 897700..898119 | within | 0 |
Gene organization within MGE regions
Location: 885190..936675
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DQM39_RS04690 (NCTC8225_00938) | - | 885190..885810 (-) | 621 | WP_002989605.1 | DUF3862 domain-containing protein | - |
| DQM39_RS04695 (NCTC8225_00939) | - | 886173..887261 (-) | 1089 | WP_002984265.1 | site-specific integrase | - |
| DQM39_RS04700 (NCTC8225_00940) | - | 887511..888320 (-) | 810 | WP_002984270.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| DQM39_RS04705 (NCTC8225_00941) | - | 888333..889070 (-) | 738 | WP_002984272.1 | XRE family transcriptional regulator | - |
| DQM39_RS09960 (NCTC8225_00942) | - | 889230..889376 (+) | 147 | WP_021340823.1 | hypothetical protein | - |
| DQM39_RS04710 (NCTC8225_00943) | - | 889373..889855 (-) | 483 | WP_023605145.1 | hypothetical protein | - |
| DQM39_RS04715 (NCTC8225_00944) | - | 889929..890156 (+) | 228 | WP_002984281.1 | hypothetical protein | - |
| DQM39_RS04720 (NCTC8225_00945) | - | 890264..890773 (-) | 510 | WP_011017884.1 | hypothetical protein | - |
| DQM39_RS04730 (NCTC8225_00947) | - | 891032..891241 (-) | 210 | WP_002984292.1 | hypothetical protein | - |
| DQM39_RS10235 (NCTC8225_00948) | - | 891297..891428 (+) | 132 | WP_002984298.1 | hypothetical protein | - |
| DQM39_RS04735 (NCTC8225_00949) | - | 891414..891632 (-) | 219 | WP_032467270.1 | hypothetical protein | - |
| DQM39_RS04740 | - | 891775..891960 (+) | 186 | WP_032461902.1 | helix-turn-helix domain-containing protein | - |
| DQM39_RS04745 (NCTC8225_00950) | - | 892039..892350 (+) | 312 | WP_014411880.1 | hypothetical protein | - |
| DQM39_RS10240 (NCTC8225_00951) | - | 892352..892486 (+) | 135 | WP_012560975.1 | hypothetical protein | - |
| DQM39_RS04750 (NCTC8225_00952) | - | 892617..892796 (+) | 180 | WP_012560974.1 | hypothetical protein | - |
| DQM39_RS04755 (NCTC8225_00953) | - | 892969..893241 (+) | 273 | WP_000370473.1 | hypothetical protein | - |
| DQM39_RS04760 (NCTC8225_00954) | - | 893231..893611 (-) | 381 | WP_000568478.1 | hypothetical protein | - |
| DQM39_RS04765 (NCTC8225_00955) | - | 893667..894110 (+) | 444 | WP_012560973.1 | hypothetical protein | - |
| DQM39_RS04770 (NCTC8225_00956) | - | 894226..895029 (+) | 804 | WP_021340639.1 | DnaD domain protein | - |
| DQM39_RS04775 (NCTC8225_00957) | - | 895016..895798 (+) | 783 | WP_021341158.1 | ATP-binding protein | - |
| DQM39_RS09965 (NCTC8225_00958) | - | 895789..895926 (+) | 138 | WP_011018145.1 | hypothetical protein | - |
| DQM39_RS04780 (NCTC8225_00959) | - | 895937..896293 (+) | 357 | WP_021341157.1 | HTH domain-containing protein | - |
| DQM39_RS04785 (NCTC8225_00960) | - | 896274..896528 (+) | 255 | WP_011018143.1 | hypothetical protein | - |
| DQM39_RS04790 (NCTC8225_00961) | - | 896550..897032 (+) | 483 | WP_111680846.1 | siphovirus Gp157 family protein | - |
| DQM39_RS04795 (NCTC8225_00962) | - | 897033..897707 (+) | 675 | WP_111680847.1 | ERF family protein | - |
| DQM39_RS04800 (NCTC8225_00963) | ssbA | 897700..898119 (+) | 420 | WP_021340323.1 | single-stranded DNA-binding protein | Machinery gene |
| DQM39_RS04805 | - | 898125..898328 (+) | 204 | WP_011106686.1 | hypothetical protein | - |
| DQM39_RS04810 (NCTC8225_00964) | - | 898328..898768 (+) | 441 | WP_011285574.1 | RusA family crossover junction endodeoxyribonuclease | - |
| DQM39_RS04815 (NCTC8225_00965) | - | 898765..899121 (+) | 357 | WP_111680848.1 | hypothetical protein | - |
| DQM39_RS10275 (NCTC8225_00966) | - | 899118..899354 (+) | 237 | WP_047235251.1 | hypothetical protein | - |
| DQM39_RS04825 (NCTC8225_00967) | - | 899348..899632 (+) | 285 | WP_020905119.1 | DUF3310 domain-containing protein | - |
| DQM39_RS04830 (NCTC8225_00968) | - | 899629..899898 (+) | 270 | WP_047235252.1 | hypothetical protein | - |
| DQM39_RS10120 | - | 899989..900102 (+) | 114 | Protein_887 | YopX family protein | - |
| DQM39_RS04840 (NCTC8225_00969) | - | 900099..900383 (+) | 285 | WP_011889038.1 | hypothetical protein | - |
| DQM39_RS04845 (NCTC8225_00970) | - | 900387..900869 (+) | 483 | WP_011017571.1 | class I SAM-dependent methyltransferase | - |
| DQM39_RS04850 (NCTC8225_00971) | - | 901060..901461 (+) | 402 | WP_002987468.1 | hypothetical protein | - |
| DQM39_RS04855 (NCTC8225_00972) | - | 901461..902096 (+) | 636 | WP_002987471.1 | N-6 DNA methylase | - |
| DQM39_RS04860 (NCTC8225_00973) | - | 902365..902802 (+) | 438 | WP_003052405.1 | DUF1492 domain-containing protein | - |
| DQM39_RS04865 (NCTC8225_00974) | - | 903011..904180 (+) | 1170 | WP_172450334.1 | IS256 family transposase | - |
| DQM39_RS04870 (NCTC8225_00976) | - | 905207..906121 (+) | 915 | WP_011284864.1 | hypothetical protein | - |
| DQM39_RS09970 | - | 906211..906444 (-) | 234 | WP_002995461.1 | hypothetical protein | - |
| DQM39_RS04880 (NCTC8225_00978) | - | 906740..907117 (-) | 378 | WP_002987543.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| DQM39_RS04885 (NCTC8225_00979) | - | 907169..907354 (-) | 186 | WP_001132273.1 | type II toxin-antitoxin system HicA family toxin | - |
| DQM39_RS04890 (NCTC8225_00980) | - | 907453..907884 (+) | 432 | WP_020833531.1 | terminase small subunit | - |
| DQM39_RS04895 (NCTC8225_00981) | - | 907862..909169 (+) | 1308 | WP_047235253.1 | PBSX family phage terminase large subunit | - |
| DQM39_RS04900 (NCTC8225_00982) | - | 909181..909855 (+) | 675 | Protein_900 | phage portal protein | - |
| DQM39_RS04905 (NCTC8225_00983) | - | 910043..911212 (-) | 1170 | WP_172450334.1 | IS256 family transposase | - |
| DQM39_RS04910 (NCTC8225_00984) | - | 911330..912166 (+) | 837 | Protein_902 | phage portal protein | - |
| DQM39_RS04915 (NCTC8225_00985) | - | 912147..913772 (+) | 1626 | WP_002984371.1 | phage head morphogenesis protein | - |
| DQM39_RS04920 (NCTC8225_00986) | - | 913763..913942 (+) | 180 | WP_010922213.1 | hypothetical protein | - |
| DQM39_RS04925 (NCTC8225_00987) | - | 914002..914271 (+) | 270 | WP_002984375.1 | hypothetical protein | - |
| DQM39_RS04930 (NCTC8225_00988) | - | 914343..914546 (+) | 204 | WP_002984377.1 | hypothetical protein | - |
| DQM39_RS04935 (NCTC8225_00989) | - | 914661..914909 (+) | 249 | WP_002984380.1 | hypothetical protein | - |
| DQM39_RS04940 (NCTC8225_00990) | - | 914911..915654 (+) | 744 | WP_002984382.1 | phage repressor protein/antirepressor Ant | - |
| DQM39_RS04945 (NCTC8225_00991) | - | 915766..916299 (+) | 534 | WP_002984384.1 | DUF4355 domain-containing protein | - |
| DQM39_RS04950 (NCTC8225_00992) | - | 916309..916689 (+) | 381 | WP_002984386.1 | phage protein | - |
| DQM39_RS04955 (NCTC8225_00993) | - | 916689..917765 (+) | 1077 | WP_002984388.1 | major capsid protein | - |
| DQM39_RS04960 (NCTC8225_00994) | - | 917775..918017 (+) | 243 | WP_002984390.1 | HeH/LEM domain-containing protein | - |
| DQM39_RS04965 (NCTC8225_00995) | - | 918031..918384 (+) | 354 | WP_002984392.1 | phage head-tail connector protein | - |
| DQM39_RS04970 (NCTC8225_00996) | - | 918381..918689 (+) | 309 | WP_002984393.1 | hypothetical protein | - |
| DQM39_RS04975 (NCTC8225_00997) | - | 918670..919035 (+) | 366 | WP_002984399.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| DQM39_RS04980 (NCTC8225_00998) | - | 919032..919421 (+) | 390 | WP_002984401.1 | hypothetical protein | - |
| DQM39_RS04985 (NCTC8225_00999) | - | 919476..920078 (+) | 603 | WP_002984403.1 | phage major tail protein, TP901-1 family | - |
| DQM39_RS04990 (NCTC8225_01000) | - | 920131..920490 (+) | 360 | WP_002984405.1 | tail assembly chaperone | - |
| DQM39_RS04995 (NCTC8225_01001) | - | 920532..920861 (+) | 330 | WP_002984407.1 | hypothetical protein | - |
| DQM39_RS05000 (NCTC8225_01002) | - | 920876..924142 (+) | 3267 | WP_047235256.1 | tape measure protein | - |
| DQM39_RS05005 (NCTC8225_01003) | - | 924174..924953 (+) | 780 | WP_002984411.1 | distal tail protein Dit | - |
| DQM39_RS05010 (NCTC8225_01004) | - | 924950..927001 (+) | 2052 | WP_111677295.1 | phage tail spike protein | - |
| DQM39_RS05015 (NCTC8225_01005) | - | 926998..928005 (+) | 1008 | WP_047235257.1 | hyaluronoglucosaminidase | - |
| DQM39_RS05020 (NCTC8225_01006) | - | 928018..929928 (+) | 1911 | WP_002987337.1 | gp58-like family protein | - |
| DQM39_RS05025 (NCTC8225_01007) | - | 929942..930103 (+) | 162 | WP_002987333.1 | hypothetical protein | - |
| DQM39_RS05030 (NCTC8225_01008) | - | 930106..930723 (+) | 618 | WP_111680849.1 | DUF1366 domain-containing protein | - |
| DQM39_RS05035 (NCTC8225_01009) | - | 930733..931008 (+) | 276 | WP_002987582.1 | hypothetical protein | - |
| DQM39_RS05040 (NCTC8225_01010) | - | 931005..931232 (+) | 228 | WP_003058873.1 | phage holin | - |
| DQM39_RS05045 (NCTC8225_01012) | - | 931348..932553 (+) | 1206 | WP_002984418.1 | glucosaminidase domain-containing protein | - |
| DQM39_RS05050 (NCTC8225_01013) | - | 932623..933057 (-) | 435 | WP_011017966.1 | hypothetical protein | - |
| DQM39_RS05055 (NCTC8225_01014) | sda3 | 933328..934128 (-) | 801 | WP_011285611.1 | streptodornase Sda3 | - |
| DQM39_RS05060 (NCTC8225_01015) | prx | 934366..934554 (+) | 189 | WP_002984426.1 | hypothetical protein | Regulator |
| DQM39_RS05070 (NCTC8225_01017) | - | 935145..935759 (+) | 615 | WP_002989607.1 | TVP38/TMEM64 family protein | - |
| DQM39_RS05075 (NCTC8225_01018) | - | 935890..936675 (-) | 786 | WP_002984433.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 15611.30 Da Isoelectric Point: 4.6702
>NTDB_id=1135472 DQM39_RS04800 WP_021340323.1 897700..898119(+) (ssbA) [Streptococcus pyogenes strain NCTC8225]
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAESFQMLESCNQQSGQGNSSQNDNSQPFGNSNPMDISDDDLPF
MINNIVLVGRMTKDAELRYTASQVAVATFTLAVNRRFKEQNGEREADFINCVIWRQSAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVAESFQMLESCNQQSGQGNSSQNDNSQPFGNSNPMDISDDDLPF
Nucleotide
Download Length: 420 bp
>NTDB_id=1135472 DQM39_RS04800 WP_021340323.1 897700..898119(+) (ssbA) [Streptococcus pyogenes strain NCTC8225]
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATCTGGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACAGGTCGTATCCAGACACGC
AACTACGAAAACCAACAAGGTCAACGCGTATATGTAACAGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTTGCAA
TCAACAATCTGGTCAAGGTAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATATTTCAG
ATGATGATCTGCCGTTTTAA
ATGATTAACAACATTGTGCTAGTTGGTCGCATGACCAAGGACGCAGAGCTTCGCTATACAGCGAGTCAAGTAGCTGTAGC
TACGTTCACACTTGCGGTAAACCGCAGATTTAAAGAGCAAAACGGGGAGAGAGAAGCAGATTTCATTAACTGTGTTATCT
GGCGACAGTCTGCTGAAAATCTGGCAAACTGGGCTAAAAAAGGTGCCTTGATCGGAATTACAGGTCGTATCCAGACACGC
AACTACGAAAACCAACAAGGTCAACGCGTATATGTAACAGAAGTTGTTGCAGAGAGTTTCCAAATGTTGGAAAGTTGCAA
TCAACAATCTGGTCAAGGTAACTCTTCGCAAAACGATAACAGTCAACCGTTTGGCAATTCAAACCCAATGGATATTTCAG
ATGATGATCTGCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.857 |
100 |
0.691 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.941 |
100 |
0.647 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.885 |
100 |
0.439 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.885 |
100 |
0.439 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
43.165 |
100 |
0.432 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.165 |
100 |
0.432 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
43.165 |
100 |
0.432 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
43.165 |
100 |
0.432 |
| ssbB/cilA | Streptococcus mitis SK321 |
43.165 |
100 |
0.432 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.769 |
74.82 |
0.417 |
| ssbA | Streptococcus mutans UA159 |
41.007 |
100 |
0.41 |
| ssb | Vibrio cholerae strain A1552 |
30.636 |
100 |
0.381 |